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Gene name
Human disease related genes
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External id
Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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782 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000006881
Group enriched
Detected in some
brain:
10.5
ductus deferens:
5.1
testis:
3.0
na
ENSSSCG00000007443
Group enriched
Detected in some
brain:
4.5
retina:
1.7
na
ENSSSCG00000007516
ENSG00000124222
Syntaxin-16
Low tissue specificity
Detected in all
na
ENSSSCG00000007813
Tissue enhanced
Detected in some
brain:
2.4
lymphoid tissue:
2.3
na
ENSSSCG00000008052
Tissue enhanced
Detected in many
brain:
10.0
testis:
22.2
na
ENSSSCG00000008120
Tissue enhanced
Detected in all
lens:
21.4
na
ENSSSCG00000008665
Group enriched
Detected in some
adrenal gland:
2.7
brain:
6.2
testis:
3.2
na
ENSSSCG00000008671
Tissue enhanced
Detected in some
brain:
6.2
epididymis:
2.7
testis:
1.1
na
ENSSSCG00000008709
ENSG00000181215
Group enriched
Detected in some
brain:
13.1
endometrium:
8.6
na
ENSSSCG00000009116
Tissue enhanced
Detected in some
brain:
6.4
male glands:
7.5
thyroid gland:
13.6
na
ENSSSCG00000009172
ENSG00000138814
Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform
Group enriched
Detected in all
brain:
93.4
cartilage:
51.5
na
ENSSSCG00000009199
Tissue enhanced
Detected in some
brain:
7.3
thyroid gland:
6.5
na
ENSSSCG00000009503
Tissue enhanced
Detected in some
adipose tissue:
9.9
brain:
24.4
smooth muscle:
12.3
thyroid gland:
27.5
na
ENSSSCG00000009508
Tissue enhanced
Detected in some
adipose tissue:
2.1
esophagus:
2.7
mouth:
4.8
upper respiratory system:
3.1
na
ENSSSCG00000009839
ENSG00000122966
Tissue enhanced
Detected in many
brain:
23.6
na
ENSSSCG00000010491
Tissue enhanced
Detected in many
fallopian tube:
61.9
na
ENSSSCG00000011178
ENSG00000196353
Tissue enriched
Detected in some
brain:
44.0
na
ENSSSCG00000011460
Tissue enhanced
Detected in many
brain:
6.3
heart:
9.1
skeletal muscle:
6.9
na
ENSSSCG00000012097
Tissue enhanced
Detected in many
brain:
11.4
na
ENSSSCG00000012431
ENSG00000143401
Tissue enhanced
Detected in some
brain:
10.1
pineal gland:
6.1
retina:
27.3
na
ENSSSCG00000012645
Tissue enhanced
Detected in some
brain:
5.2
ductus deferens:
15.6
epididymis:
17.3
male glands:
6.0
na
ENSSSCG00000013027
ENSG00000219435
Tissue enriched
Detected in some
testis:
80.1
na
ENSSSCG00000013386
ENSG00000175868
Calcitonin receptor-stimulating peptide 3
Low tissue specificity
Detected in all
na
ENSSSCG00000013395
ENSG00000148925
Low tissue specificity
Detected in all
na
ENSSSCG00000013607
Group enriched
Detected in some
brain:
5.6
testis:
3.0
na
ENSSSCG00000013609
Tissue enhanced
Detected in many
brain:
11.6
na
ENSSSCG00000013610
Tissue enhanced
Detected in some
brain:
3.6
na
ENSSSCG00000013717
Low tissue specificity
Detected in many
na
ENSSSCG00000014097
ENSG00000113231,ENSG00000284762
Tissue enhanced
Detected in many
brain:
29.5
thyroid gland:
26.6
na
ENSSSCG00000014294
Tissue enhanced
Detected in some
adrenal gland:
14.8
upper respiratory system:
4.8
na
ENSSSCG00000014385
ENSG00000243232
Tissue enhanced
Detected in many
brain:
26.3
na
ENSSSCG00000014643
Tissue enriched
Detected in single
brain:
5.6
na
ENSSSCG00000015103
Low tissue specificity
Detected in many
na
ENSSSCG00000015620
Tissue enhanced
Detected in some
brain:
2.9
dura mater:
4.0
fallopian tube:
1.3
na
ENSSSCG00000015839
ENSG00000157168
Tissue enhanced
Detected in many
skin:
58.7
na
ENSSSCG00000016161
Tissue enhanced
Detected in some
brain:
5.1
heart:
11.5
na
ENSSSCG00000016241
Tissue enhanced
Detected in single
brain:
1.4
na
ENSSSCG00000016393
ENSG00000136698,ENSG00000152093
Tissue enhanced
Detected in some
brain:
7.6
lymphoid tissue:
4.0
pineal gland:
4.6
testis:
3.5
na
ENSSSCG00000016800
Group enriched
Detected in some
brain:
17.2
retina:
7.7
smooth muscle:
9.0
na
ENSSSCG00000016927
Not detected
Not detected
na
ENSSSCG00000017018
ENSG00000145934
Tissue enhanced
Detected in many
brain:
20.0
pineal gland:
16.1
skin:
21.0
na
ENSSSCG00000017313
ENSG00000120088,ENSG00000263715
Corticotropin-releasing factor receptor 1 precursor
Group enriched
Detected in some
brain:
25.9
pituitary gland:
11.5
na
ENSSSCG00000017724
Group enriched
Detected in some
brain:
16.5
retina:
9.2
na
ENSSSCG00000021095
Tissue enhanced
Detected in some
brain:
8.6
retina:
3.0
na
ENSSSCG00000021375
ENSG00000171004
Group enriched
Detected in some
brain:
9.3
cartilage:
19.1
kidney:
8.2
na
ENSSSCG00000023332
Group enriched
Detected in some
brain:
78.0
pineal gland:
38.2
retina:
41.8
na
ENSSSCG00000023754
Group enriched
Detected in some
brain:
26.5
epididymis:
12.3
na
ENSSSCG00000023771
Tissue enhanced
Detected in many
testis:
13.9
na
ENSSSCG00000024140
Tissue enhanced
Detected in single
brain:
1.4
na
ENSSSCG00000024717
Tissue enhanced
Detected in some
brain:
5.6
skin:
2.4
testis:
1.2
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