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Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
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Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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782 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GABRG3
ENSSSCG00000035584
ENSG00000182256
Gamma-aminobutyric acid type A receptor gamma3 subunit
Tissue enhanced
Detected in some
brain:
17.5
cornea:
10.3
thyroid gland:
7.7
GALP
ENSSSCG00000003318
ENSG00000197487
Galanin-like peptide isoform 2 precursor
Tissue enhanced
Detected in many
brain:
18.9
liver:
33.8
vagus nerve:
25.7
GDA
ENSSSCG00000034919
ENSG00000119125
Guanine deaminase
Tissue enriched
Detected in some
brain:
32.3
GFOD1
ENSSSCG00000035867
ENSG00000145990
Glucose-fructose oxidoreductase domain containing 1
Tissue enhanced
Detected in all
brain:
24.2
GFRAL
ENSSSCG00000001480
ENSG00000187871
GDNF family receptor alpha like
Tissue enhanced
Detected in some
adrenal gland:
9.5
brain:
3.3
pituitary gland:
3.4
smooth muscle:
3.3
GNAL
ENSSSCG00000022163
ENSG00000141404
G protein subunit alpha L
Tissue enriched
Detected in some
brain:
67.5
GNG14
ENSSSCG00000013724
ENSG00000283980
G protein subunit gamma 14
Tissue enhanced
Detected in many
epididymis:
16.3
GPR12
ENSSSCG00000009301
ENSG00000132975
G-protein coupled receptor 12
Group enriched
Detected in some
brain:
19.3
retina:
7.2
GPR148
ENSSSCG00000036040
ENSG00000173302
G protein-coupled receptor 148
Group enriched
Detected in some
brain:
6.7
lymphoid tissue:
4.8
pineal gland:
3.7
pituitary gland:
3.5
GPR150
ENSSSCG00000014140
ENSG00000178015
G protein-coupled receptor 150
Tissue enhanced
Detected in many
brain:
5.8
cornea:
4.6
GPR19
ENSSSCG00000040400
ENSG00000183150
G protein-coupled receptor 19
Tissue enhanced
Detected in many
brain:
11.6
lymphoid tissue:
16.7
testis:
14.5
GPR22
ENSSSCG00000015442
ENSG00000172209
G protein-coupled receptor 22
Tissue enriched
Detected in many
brain:
39.3
GPR26
ENSSSCG00000010727
ENSG00000154478
G protein-coupled receptor 26
Tissue enhanced
Detected in some
brain:
35.3
lens:
11.8
retina:
7.1
GPR32
ENSSSCG00000028145
ENSG00000142511
G protein-coupled receptor 32
Tissue enhanced
Detected in some
brain:
1.7
dura mater:
1.5
GPR63
ENSSSCG00000035240
ENSG00000112218
G protein-coupled receptor 63
Tissue enhanced
Detected in many
brain:
18.9
lens:
15.6
GPR83
ENSSSCG00000022490
ENSG00000123901
Probable G-protein coupled receptor 83 precursor
Tissue enhanced
Detected in all
brain:
16.8
breast:
14.4
GPR88
ENSSSCG00000035602
ENSG00000181656
G protein-coupled receptor 88
Tissue enriched
Detected in some
brain:
89.0
GRIN2A
ENSSSCG00000031290
ENSG00000183454
Glutamate ionotropic receptor NMDA type subunit 2A
Tissue enriched
Detected in some
brain:
33.0
GRK3
ENSSSCG00000009956
ENSG00000100077
G protein-coupled receptor kinase 3
Tissue enhanced
Detected in all
lymphoid tissue:
61.3
GRM2
ENSSSCG00000011423
ENSG00000164082
Glutamate metabotropic receptor 2
Tissue enhanced
Detected in all
brain:
18.2
GRP
ENSSSCG00000037300
ENSG00000134443
Gastrin releasing peptide
Group enriched
Detected in some
brain:
22.7
cornea:
33.4
GSG1L
ENSSSCG00000022785
ENSG00000169181
GSG1 like
Low tissue specificity
Detected in all
HCRTR1
ENSSSCG00000003601
ENSG00000121764
Orexin receptor type 1
Tissue enhanced
Detected in some
brain:
11.2
kidney:
4.6
HECTD2
ENSSSCG00000020912
ENSG00000165338
HECT domain E3 ubiquitin protein ligase 2
Tissue enhanced
Detected in many
brain:
43.7
male glands:
22.5
HECTD4
ENSSSCG00000009885
ENSG00000173064
HECT domain E3 ubiquitin protein ligase 4
Low tissue specificity
Detected in all
HERC1
ENSSSCG00000004561
ENSG00000103657
HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
Low tissue specificity
Detected in all
HES5
ENSSSCG00000037304
ENSG00000197921
Hes family bHLH transcription factor 5
Tissue enhanced
Detected in some
brain:
11.4
lens:
3.1
retina:
3.8
HES6
ENSSSCG00000016342
ENSG00000144485
Hes family bHLH transcription factor 6
Tissue enhanced
Detected in many
adipose tissue:
24.4
HHLA1
ENSSSCG00000022257
ENSG00000132297
HERV-H LTR-associating 1
Tissue enhanced
Detected in some
brain:
1.9
retina:
1.3
skin:
2.2
HNRNPLL
ENSSSCG00000020878
ENSG00000143889
Heterogeneous nuclear ribonucleoprotein L like
Low tissue specificity
Detected in all
HOMER1
ENSSSCG00000014113
ENSG00000152413
Homer protein homolog 1
Tissue enhanced
Detected in many
brain:
51.9
skeletal muscle:
39.4
HPCA
ENSSSCG00000032664
ENSG00000121905
Neuron-specific calcium-binding protein hippocalcin
Tissue enriched
Detected in some
brain:
171.1
HPCAL4
ENSSSCG00000023460
ENSG00000116983
Hippocalcin-like protein 4
Tissue enriched
Detected in some
brain:
65.9
HRK
ENSSSCG00000033216
ENSG00000135116
Harakiri, BCL2 interacting protein
Tissue enriched
Detected in many
cervix:
26.7
HS3ST4
ENSSSCG00000039406
ENSG00000182601
Heparan sulfate-glucosamine 3-sulfotransferase 4
Tissue enriched
Detected in some
brain:
17.4
HS6ST3
ENSSSCG00000009504
ENSG00000185352
Heparan sulfate 6-O-sulfotransferase 3
Tissue enhanced
Detected in many
brain:
30.3
thyroid gland:
11.0
HTR1E
ENSSSCG00000035251
ENSG00000168830
5-hydroxytryptamine receptor 1E
Tissue enhanced
Detected in some
brain:
8.3
thyroid gland:
9.6
vagus nerve:
3.8
HTR1F
ENSSSCG00000030227
ENSG00000179097
5-hydroxytryptamine receptor 1F
Tissue enhanced
Detected in some
brain:
6.2
kidney:
9.9
salivary gland:
10.0
vagus nerve:
9.0
HTR2A
ENSSSCG00000037452
ENSG00000102468
5-hydroxytryptamine receptor 2A
Low tissue specificity
Detected in all
HTR3A
ENSSSCG00000024497
ENSG00000166736
5-hydroxytryptamine receptor 3A
Group enriched
Detected in some
brain:
7.5
testis:
2.3
HTR3D
ENSSSCG00000011784
ENSG00000186090
5-hydroxytryptamine receptor 3D
Tissue enhanced
Detected in some
ovary:
5.3
HTR5A
ENSSSCG00000032032
ENSG00000157219
5-hydroxytryptamine receptor 5A
Group enriched
Detected in some
brain:
7.2
salivary gland:
4.0
testis:
12.0
HTR6
ENSSSCG00000025244
ENSG00000158748
5-hydroxytryptamine receptor 6
Tissue enriched
Detected in many
brain:
15.1
ICAM5
ENSSSCG00000013653
ENSG00000105376
Intercellular adhesion molecule 5
Tissue enriched
Detected in many
brain:
38.1
IFITM5
ENSSSCG00000040278
ENSG00000206013
Interferon induced transmembrane protein 5
Tissue enhanced
Detected in many
brain:
21.2
testis:
14.1
IFN-ALPHAOMEGA
ENSSSCG00000021504
Interferon-alphaomega precursor
Tissue enhanced
Detected in some
brain:
1.7
heart:
1.4
IFNB1
ENSSSCG00000005163
ENSG00000171855
Interferon beta precursor
Tissue enhanced
Detected in single
brain:
2.4
IGLV2-33
ENSSSCG00000039192
Immunoglobulin lambda variable 2-33 (non-functional)
Tissue enhanced
Detected in single
brain:
1.9
IGSF21
ENSSSCG00000020992
ENSG00000117154
Immunoglobin superfamily member 21
Group enriched
Detected in many
brain:
27.3
pineal gland:
14.6
retina:
11.5
IL5RA
ENSSSCG00000011528
ENSG00000091181
Interleukin 5 receptor subunit alpha
Tissue enhanced
Detected in some
brain:
5.4
heart:
3.7
stomach:
3.3
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