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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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782 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DLX6
ENSSSCG00000033314
ENSG00000006377
Distal-less homeobox 6
Tissue enhanced
Detected in some
brain:
22.5
dura mater:
10.8
endometrium:
29.0
DNAJC5
ENSSSCG00000031602
ENSG00000101152
DnaJ heat shock protein family (Hsp40) member C5
Low tissue specificity
Detected in all
DOC2A
ENSSSCG00000034635
ENSG00000149927
Double C2 domain alpha
Tissue enriched
Detected in many
brain:
22.6
DPY19L2
ENSSSCG00000016663
ENSG00000177990
Dpy-19 like 2
Tissue enriched
Detected in some
testis:
65.2
DPYSL4
ENSSSCG00000010762
ENSG00000151640
Dihydropyrimidinase like 4
Group enriched
Detected in some
brain:
10.8
pituitary gland:
3.5
retina:
10.4
DRD1
ENSSSCG00000029037
ENSG00000184845
D(1A) dopamine receptor
Tissue enriched
Detected in some
brain:
47.5
DRD3
ENSSSCG00000011911
ENSG00000151577
Dopamine receptor D3
Tissue enriched
Detected in some
brain:
26.2
DTX1
ENSSSCG00000009873
ENSG00000135144
Deltex E3 ubiquitin ligase 1
Low tissue specificity
Detected in many
DYDC1
ENSSSCG00000010338
ENSG00000170788
DPY30 domain containing 1
Tissue enhanced
Detected in some
brain:
10.0
testis:
21.2
DZIP1
ENSSSCG00000009501
ENSG00000134874
DAZ interacting zinc finger protein 1
Tissue enhanced
Detected in all
brain:
71.9
EBNA1BP2
ENSSSCG00000030177
ENSG00000117395
EBNA1 binding protein 2
Low tissue specificity
Detected in all
EGR4
ENSSSCG00000036364
ENSG00000135625
Early growth response protein 4
Tissue enhanced
Detected in many
brain:
16.1
ovary:
17.4
EIF4E2
ENSSSCG00000038466
ENSG00000135930
Eukaryotic translation initiation factor 4E type 2
Low tissue specificity
Detected in all
ELFN1
ENSSSCG00000030485
ENSG00000225968
Extracellular leucine rich repeat and fibronectin type III domain containing 1
Group enriched
Detected in some
brain:
7.6
retina:
22.1
testis:
10.9
EMID1
ENSSSCG00000009975
ENSG00000186998
EMI domain containing 1
Tissue enhanced
Detected in many
vagus nerve:
31.0
EMX1
ENSSSCG00000008308
ENSG00000135638
Empty spiracles homeobox 1
Group enriched
Detected in some
brain:
12.2
kidney:
19.2
ENC1
ENSSSCG00000014072
ENSG00000171617
Ectodermal-neural cortex 1
Tissue enriched
Detected in many
brain:
112.4
ENSA
ENSSSCG00000006653
ENSG00000143420
Endosulfine alpha
Low tissue specificity
Detected in all
EPHA4
ENSSSCG00000016230
ENSG00000116106
Ephrin type-A receptor 4 precursor
Tissue enhanced
Detected in many
brain:
38.2
EPHA7
ENSSSCG00000004336
ENSG00000135333
EPH receptor A7
Tissue enhanced
Detected in many
brain:
41.3
smooth muscle:
21.2
EPHA8
ENSSSCG00000003523
ENSG00000070886
EPH receptor A8
Group enriched
Detected in some
brain:
22.4
pineal gland:
12.2
EPHB6
ENSSSCG00000016473
ENSG00000106123
EPH receptor B6
Tissue enhanced
Detected in many
lymphoid tissue:
43.6
male glands:
24.3
EPHX4
ENSSSCG00000032057
ENSG00000172031
Epoxide hydrolase 4
Tissue enhanced
Detected in many
brain:
18.0
cartilage:
16.7
EPYC
ENSSSCG00000000918
ENSG00000083782
Epiphycan
Tissue enhanced
Detected in some
brain:
9.0
cartilage:
6.0
EXOC6
ENSSSCG00000010473
ENSG00000138190
Exocyst complex component 6
Low tissue specificity
Detected in all
F5
ENSSSCG00000006289
ENSG00000198734
Coagulation factor V precursor
Tissue enhanced
Detected in many
brain:
29.6
liver:
63.5
salivary gland:
23.0
upper respiratory system:
23.6
FADS6
ENSSSCG00000017226
ENSG00000172782
Fatty acid desaturase 6
Tissue enhanced
Detected in many
epididymis:
47.3
liver:
40.5
FAM131A
ENSSSCG00000028372
ENSG00000175182
Protein FAM131A
Tissue enriched
Detected in many
brain:
35.6
FAM163B
ENSSSCG00000026442
ENSG00000196990
Family with sequence similarity 163 member B
Group enriched
Detected in some
brain:
37.5
retina:
10.7
FAM181A
ENSSSCG00000040253
ENSG00000140067
Family with sequence similarity 181 member A
Group enriched
Detected in some
brain:
19.1
testis:
54.1
FAM43B
ENSSSCG00000030706
ENSG00000183114
Family with sequence similarity 43 member B
Tissue enhanced
Detected in many
kidney:
23.9
male glands:
20.7
stomach:
22.1
FAM49A
ENSSSCG00000008617
ENSG00000197872
Family with sequence similarity 49 member A
Tissue enhanced
Detected in all
lymphoid tissue:
42.3
FAM71C
ENSSSCG00000037573
ENSG00000180219
Family with sequence similarity 71 member C
Tissue enhanced
Detected in some
brain:
19.2
choroid plexus:
4.6
pineal gland:
5.4
retina:
5.8
FAM81A
ENSSSCG00000004586
ENSG00000157470
Family with sequence similarity 81 member A
Tissue enhanced
Detected in many
brain:
28.4
FBXL16
ENSSSCG00000008006
ENSG00000127585
F-box and leucine rich repeat protein 16
Tissue enriched
Detected in many
brain:
117.3
FBXO10
ENSSSCG00000005350
ENSG00000147912
F-box protein 10
Tissue enhanced
Detected in all
epididymis:
26.5
FBXO41
ENSSSCG00000008302
ENSG00000163013
F-box protein 41
Tissue enriched
Detected in some
brain:
26.0
FBXW7
ENSSSCG00000020879
ENSG00000109670
F-box and WD repeat domain containing 7
Tissue enhanced
Detected in all
brain:
47.5
FEZF2
ENSSSCG00000011487
ENSG00000153266
FEZ family zinc finger 2
Group enriched
Detected in some
brain:
20.6
retina:
5.5
FGF21
ENSSSCG00000003140
ENSG00000105550
Fibroblast growth factor 21 precursor
Tissue enhanced
Detected in many
skeletal muscle:
16.3
FGFBP3
ENSSSCG00000010466
ENSG00000174721
Fibroblast growth factor-binding protein 3 precursor
Tissue enhanced
Detected in some
brain:
6.4
lens:
3.6
FIBCD1
ENSSSCG00000005707
ENSG00000130720
Fibrinogen C domain containing 1
Group enriched
Detected in some
brain:
41.2
male glands:
21.0
FOXG1
ENSSSCG00000033761
ENSG00000176165
Forkhead box G1
Group enriched
Detected in some
brain:
43.5
testis:
17.4
upper respiratory system:
10.9
FOXH1
ENSSSCG00000005902
ENSG00000160973
Forkhead box H1
Tissue enhanced
Detected in many
brain:
6.9
FOXRED2
ENSSSCG00000000142
ENSG00000100350
FAD-dependent oxidoreductase domain-containing protein 2 precursor
Tissue enhanced
Detected in all
epididymis:
28.1
FRMPD4
ENSSSCG00000030877
ENSG00000169933
FERM and PDZ domain containing 4
Tissue enriched
Detected in many
choroid plexus:
70.0
G6PC2
ENSSSCG00000015925
ENSG00000152254
Glucose-6-phosphatase catalytic subunit 2
Tissue enhanced
Detected in some
brain:
3.1
cartilage:
1.0
retina:
1.6
GABBR1
ENSSSCG00000001242
ENSG00000204681
Gamma-aminobutyric acid type B receptor subunit 1 precursor
Tissue enhanced
Detected in all
brain:
74.5
GABRA5
ENSSSCG00000004827
ENSG00000186297
Gamma-aminobutyric acid type A receptor alpha5 subunit
Tissue enriched
Detected in some
brain:
41.3
GABRD
ENSSSCG00000035018
ENSG00000187730
Gamma-aminobutyric acid type A receptor delta subunit
Tissue enhanced
Detected in some
brain:
30.7
esophagus:
8.3
male glands:
16.6
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