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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Other congenital disorders
Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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782 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CABP1
ENSSSCG00000009913
ENSG00000157782
Calcium binding protein 1
Tissue enriched
Detected in some
brain:
58.6
CACNA1E
ENSSSCG00000015543
ENSG00000198216
Calcium voltage-gated channel subunit alpha1 E
Tissue enhanced
Detected in many
brain:
30.0
CACNA2D3
ENSSSCG00000027019
ENSG00000157445
Calcium voltage-gated channel auxiliary subunit alpha2delta 3
Tissue enhanced
Detected in many
brain:
24.1
heart:
16.5
CACNB1
ENSSSCG00000017510
ENSG00000067191
Calcium voltage-gated channel auxiliary subunit beta 1
Tissue enhanced
Detected in all
skeletal muscle:
66.7
CACNB3
ENSSSCG00000032967
ENSG00000167535
Calcium voltage-gated channel auxiliary subunit beta 3
Tissue enriched
Detected in many
brain:
23.0
CACNG3
ENSSSCG00000036255
ENSG00000006116
Calcium voltage-gated channel auxiliary subunit gamma 3
Tissue enhanced
Detected in all
brain:
26.4
CACNG8
ENSSSCG00000003255
ENSG00000142408
Calcium voltage-gated channel auxiliary subunit gamma 8
Tissue enriched
Detected in some
brain:
48.4
CALB1
ENSSSCG00000006125
ENSG00000104327
Calbindin
Group enriched
Detected in some
brain:
76.8
kidney:
42.2
retina:
19.6
CAMK1D
ENSSSCG00000011111
ENSG00000183049
Calcium/calmodulin-dependent protein kinase type 1D
Tissue enhanced
Detected in many
epididymis:
48.3
CAMK2A
ENSSSCG00000014443
ENSG00000070808
Calcium/calmodulin dependent protein kinase II alpha
Tissue enriched
Detected in some
brain:
130.1
CAMK2B
ENSSSCG00000039535
ENSG00000058404
Calcium/calmodulin dependent protein kinase II beta
Tissue enhanced
Detected in some
brain:
59.2
heart:
18.2
skeletal muscle:
17.4
CAMK4
ENSSSCG00000037019
ENSG00000152495
Calcium/calmodulin dependent protein kinase IV
Tissue enhanced
Detected in many
brain:
29.5
lymphoid tissue:
64.3
CAMKV
ENSSSCG00000025416
ENSG00000164076
CaM kinase like vesicle associated
Tissue enriched
Detected in some
brain:
59.1
CBLN2
ENSSSCG00000020859
ENSG00000141668
Cerebellin-2
Tissue enriched
Detected in some
brain:
26.0
CCDC177
ENSSSCG00000002310
ENSG00000267909
Coiled-coil domain containing 177
Group enriched
Detected in some
brain:
7.9
retina:
13.9
CCKBR
ENSSSCG00000033806
ENSG00000110148
Cholecystokinin B receptor
Group enriched
Detected in many
brain:
22.1
fallopian tube:
9.6
CDH9
ENSSSCG00000020845
ENSG00000113100
Cadherin 9
Tissue enhanced
Detected in some
brain:
18.1
epididymis:
5.9
CDYL2
ENSSSCG00000038128
ENSG00000166446
Chromodomain Y like 2
Tissue enhanced
Detected in all
adrenal gland:
33.5
CELF5
ENSSSCG00000013476
ENSG00000161082
CUGBP Elav-like family member 5
Tissue enhanced
Detected in some
brain:
27.0
fallopian tube:
9.1
CEP152
ENSSSCG00000004657
ENSG00000103995
Centrosomal protein 152
Tissue enhanced
Detected in many
vagus nerve:
40.6
CEP19
ENSSSCG00000021918
ENSG00000174007
Centrosomal protein 19
Low tissue specificity
Detected in all
CHRM4
ENSSSCG00000013261
ENSG00000180720
Cholinergic receptor muscarinic 4
Group enriched
Detected in some
brain:
17.5
lymphoid tissue:
15.6
CHRNA5
ENSSSCG00000001751
ENSG00000169684
Cholinergic receptor nicotinic alpha 5 subunit
Tissue enriched
Detected in some
brain:
10.2
CHST1
ENSSSCG00000013273
ENSG00000175264
Carbohydrate sulfotransferase 1
Tissue enhanced
Detected in many
brain:
37.4
cornea:
15.8
CITED1
ENSSSCG00000012409
ENSG00000125931
Cbp/p300-interacting transactivator 1
Tissue enhanced
Detected in many
adrenal gland:
47.3
testis:
101.4
CLSTN2
ENSSSCG00000011666
ENSG00000158258
Calsyntenin 2
Tissue enhanced
Detected in many
brain:
29.4
CLVS1
ENSSSCG00000006230
ENSG00000177182
Clavesin 1
Tissue enhanced
Detected in many
brain:
37.4
pineal gland:
20.6
CMSS1
ENSSSCG00000011970
ENSG00000184220
Cms1 ribosomal small subunit homolog (yeast)
Low tissue specificity
Detected in all
CMTR1
ENSSSCG00000001579
ENSG00000137200
Cap methyltransferase 1
Low tissue specificity
Detected in all
CNTN3
ENSSSCG00000011522
ENSG00000113805
Contactin 3
Low tissue specificity
Detected in all
COCH
ENSSSCG00000022679
ENSG00000100473
Cochlin
Tissue enriched
Detected in some
cartilage:
173.1
CORT
ENSSSCG00000027822
ENSG00000241563
Cortistatin precursor
Group enriched
Detected in some
brain:
6.5
testis:
4.3
CPNE5
ENSSSCG00000001567
ENSG00000124772
Copine 5
Tissue enriched
Detected in some
brain:
65.8
CPNE6
ENSSSCG00000002011
ENSG00000100884
Copine 6
Tissue enriched
Detected in some
brain:
76.3
CRB1
ENSSSCG00000021897
ENSG00000134376
Crumbs 1, cell polarity complex component
Tissue enriched
Detected in some
retina:
41.3
CRH
ENSSSCG00000006215
ENSG00000147571
Corticoliberin
Tissue enhanced
Detected in some
brain:
24.8
heart:
8.9
lens:
7.5
CRHBP
ENSSSCG00000014093
ENSG00000145708
Corticotropin-releasing factor-binding protein precursor
Tissue enriched
Detected in all
brain:
22.3
CRTC1
ENSSSCG00000013915
ENSG00000105662
CREB regulated transcription coactivator 1
Tissue enhanced
Detected in all
brain:
50.3
CTXN1
ENSSSCG00000036220
ENSG00000178531
Cortexin 1
Tissue enriched
Detected in some
brain:
90.5
CUX2
ENSSSCG00000009831
ENSG00000111249
Cut like homeobox 2
Tissue enhanced
Detected in many
adrenal gland:
30.8
brain:
22.8
choroid plexus:
37.1
liver:
32.3
CYFIP2
ENSSSCG00000017054
ENSG00000055163
Cytoplasmic FMR1 interacting protein 2
Tissue enhanced
Detected in many
brain:
48.7
lymphoid tissue:
43.3
CYP26A1
ENSSSCG00000010475
ENSG00000095596
Cytochrome P450, family 26, subfamily A, polypeptide 1
Tissue enhanced
Detected in some
brain:
10.6
cornea:
10.6
endometrium:
15.5
retina:
6.7
DDN
ENSSSCG00000000184
ENSG00000181418
Dendrin
Tissue enriched
Detected in some
brain:
60.6
DGKE
ENSSSCG00000017615
ENSG00000153933
Diacylglycerol kinase epsilon
Low tissue specificity
Detected in all
DIO2
ENSSSCG00000040638
ENSG00000211448
Type II iodothyronine deiodinase
Tissue enhanced
Detected in many
mouth:
29.3
pituitary gland:
33.9
thyroid gland:
45.9
DLG4
ENSSSCG00000024285
ENSG00000132535
Discs large MAGUK scaffold protein 4
Tissue enhanced
Detected in all
brain:
59.7
pineal gland:
35.1
retina:
43.1
DLGAP2
ENSSSCG00000015746
ENSG00000198010
Disks large-associated protein 2
Group enriched
Detected in some
brain:
16.6
lens:
10.7
DLGAP3
ENSSSCG00000040173
ENSG00000116544
DLG associated protein 3
Tissue enriched
Detected in some
brain:
41.0
DLX1
ENSSSCG00000015953
ENSG00000144355
Distal-less homeobox 1
Tissue enriched
Detected in some
brain:
47.9
DLX2
ENSSSCG00000015954
ENSG00000115844
Distal-less homeobox 2
Group enriched
Detected in some
brain:
29.2
skin:
10.6
vagus nerve:
12.3
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