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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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782 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC44A5
ENSSSCG00000003777
ENSG00000137968
Solute carrier family 44 member 5
Tissue enhanced
Detected in many
brain:
22.1
heart:
14.9
skeletal muscle:
9.8
testis:
18.5
SLC6A17
ENSSSCG00000006811
ENSG00000197106
Solute carrier family 6 member 17
Tissue enhanced
Detected in many
brain:
42.8
SLC6A7
ENSSSCG00000014447
ENSG00000011083
Solute carrier family 6 member 7
Group enriched
Detected in many
brain:
24.8
male glands:
8.0
stomach:
25.2
SLC8A2
ENSSSCG00000029567
ENSG00000118160
Solute carrier family 8 member A2
Tissue enriched
Detected in many
brain:
33.4
SLC9A5
ENSSSCG00000002783
ENSG00000135740
Solute carrier family 9 member A5
Tissue enhanced
Detected in many
brain:
27.5
SLCO1C1
ENSSSCG00000000585
ENSG00000139155
Solute carrier organic anion transporter family member 1C1
Group enriched
Detected in some
brain:
20.6
choroid plexus:
47.5
SMAP2
ENSSSCG00000003983
ENSG00000084070
Stromal membrane-associated protein 2
Tissue enhanced
Detected in all
brain:
42.0
SMIM32
ENSSSCG00000040031
ENSG00000271824
Small integral membrane protein 32
Tissue enhanced
Detected in many
brain:
27.6
male glands:
20.0
pineal gland:
19.9
SMPD3
ENSSSCG00000002764
ENSG00000103056
Sphingomyelin phosphodiesterase 3
Tissue enriched
Detected in many
cartilage:
115.7
SORCS2
ENSSSCG00000037539
ENSG00000184985
Sortilin related VPS10 domain containing receptor 2
Low tissue specificity
Detected in many
SORCS3
ENSSSCG00000010617
ENSG00000156395
Sortilin related VPS10 domain containing receptor 3
Tissue enhanced
Detected in some
brain:
15.0
epididymis:
7.6
upper respiratory system:
6.0
SOX11
ENSSSCG00000008649
ENSG00000176887
SRY-box 11
Group enriched
Detected in some
brain:
18.5
heart:
10.2
upper respiratory system:
5.6
SOX21
ENSSSCG00000009494
ENSG00000125285
SRY-box 21
Tissue enhanced
Detected in some
skin:
16.6
stomach:
55.5
upper respiratory system:
13.7
SP9
ENSSSCG00000036172
ENSG00000217236
Sp9 transcription factor
Tissue enriched
Detected in some
brain:
30.7
SPRED3
ENSSSCG00000035216
ENSG00000188766
Sprouty related EVH1 domain containing 3
Low tissue specificity
Detected in many
SPTSSB
ENSSSCG00000029080
ENSG00000196542
Serine palmitoyltransferase small subunit B
Tissue enhanced
Detected in some
brain:
8.4
large intestine:
13.5
skin:
8.4
stomach:
21.7
urinary bladder:
8.1
SPX
ENSSSCG00000032123
ENSG00000134548
Spexin hormone
Tissue enhanced
Detected in many
brain:
30.7
large intestine:
33.5
stomach:
24.6
SRR
ENSSSCG00000039918
ENSG00000167720
Serine racemase
Low tissue specificity
Detected in all
SST
ENSSSCG00000033815
ENSG00000157005
Somatostatin Somatostatin-28 Somatostatin-14
Tissue enhanced
Detected in many
brain:
31.9
small intestine:
13.8
stomach:
17.6
SSTR1
ENSSSCG00000001938
ENSG00000139874
Somatostatin receptor type 1
Group enriched
Detected in some
brain:
21.2
male glands:
12.4
stomach:
10.6
testis:
5.4
SSTR3
ENSSSCG00000027106
ENSG00000278195
Somatostatin receptor type 3
Tissue enhanced
Detected in many
brain:
12.8
choroid plexus:
49.4
SSX2IP
ENSSSCG00000003757
ENSG00000117155
SSX family member 2 interacting protein
Tissue enhanced
Detected in all
lens:
80.1
ST6GALNAC5
ENSSSCG00000033425
ENSG00000117069
Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
Group enriched
Detected in many
brain:
34.8
retina:
9.5
STK32C
ENSSSCG00000010761
ENSG00000165752
Serine/threonine kinase 32C
Tissue enhanced
Detected in some
brain:
24.3
thyroid gland:
6.3
urinary bladder:
9.0
STOX2
ENSSSCG00000015780
ENSG00000173320
Storkhead box 2
Low tissue specificity
Detected in all
STRIP1
ENSSSCG00000006813
ENSG00000143093
Striatin interacting protein 1
Low tissue specificity
Detected in all
STX1A
ENSSSCG00000007772
ENSG00000106089
Syntaxin 1A
Tissue enriched
Detected in many
brain:
49.1
STXBP5
ENSSSCG00000004113
ENSG00000164506
Syntaxin binding protein 5
Low tissue specificity
Detected in all
SULT6B1
ENSSSCG00000038378
ENSG00000138068
Sulfotransferase family 6B member 1
Tissue enhanced
Detected in some
brain:
4.5
SV2B
ENSSSCG00000002262
ENSG00000185518
Synaptic vesicle glycoprotein 2B
Group enriched
Detected in some
brain:
39.0
pineal gland:
59.9
retina:
27.8
SYNGAP1
ENSSSCG00000001513
ENSG00000197283
Synaptic Ras GTPase activating protein 1
Tissue enhanced
Detected in many
brain:
38.8
SYNJ1
ENSSSCG00000012035
ENSG00000159082
Synaptojanin 1
Tissue enhanced
Detected in all
brain:
43.7
SYNPR
ENSSSCG00000027617
ENSG00000163630
Synaptoporin
Tissue enriched
Detected in some
brain:
65.3
SYT16
ENSSSCG00000005098
ENSG00000139973
Synaptotagmin 16
Tissue enhanced
Detected in some
brain:
22.1
stomach:
10.8
testis:
7.4
SYT17
ENSSSCG00000022200
ENSG00000103528
Synaptotagmin 17
Group enriched
Detected in all
brain:
26.4
lens:
68.5
SYT3
ENSSSCG00000003222
ENSG00000213023
Synaptotagmin 3
Tissue enhanced
Detected in many
brain:
16.3
skin:
14.5
SYT7
ENSSSCG00000021906
ENSG00000011347
Synaptotagmin 7
Tissue enhanced
Detected in many
brain:
38.8
TANC2
ENSSSCG00000017298
ENSG00000170921
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
Low tissue specificity
Detected in many
TBR1
ENSSSCG00000015891
ENSG00000136535
T-box, brain 1
Tissue enriched
Detected in some
brain:
30.3
THOC3
ENSSSCG00000014061
ENSG00000051596
THO complex 3
Low tissue specificity
Detected in all
TIAM1
ENSSSCG00000012034
ENSG00000156299
T cell lymphoma invasion and metastasis 1
Tissue enhanced
Detected in many
brain:
111.2
skin:
29.9
TMEM121B
ENSSSCG00000036523
ENSG00000183307
Transmembrane protein 121B
Group enriched
Detected in some
brain:
12.9
male glands:
3.4
TMEM132D
ENSSSCG00000038915
ENSG00000151952
Transmembrane protein 132D
Group enriched
Detected in some
brain:
29.9
retina:
7.5
TMEM196
ENSSSCG00000015373
ENSG00000173452
Transmembrane protein 196
Group enriched
Detected in many
brain:
12.3
pineal gland:
11.3
retina:
22.4
synovial tissue:
25.2
TMEM200A
ENSSSCG00000004201
ENSG00000164484
Transmembrane protein 200A
Tissue enhanced
Detected in many
brain:
16.9
cervix:
24.6
ovary:
14.0
TMEM215
ENSSSCG00000011002
ENSG00000188133
Transmembrane protein 215
Tissue enhanced
Detected in many
brain:
16.1
pineal gland:
11.5
retina:
19.4
TMEM240
ENSSSCG00000038530
ENSG00000205090
Transmembrane protein 240
Tissue enhanced
Detected in many
brain:
11.1
TMEM25
ENSSSCG00000029395
ENSG00000149582
Transmembrane protein 25
Tissue enhanced
Detected in many
breast:
24.1
liver:
41.8
TMEM74
ENSSSCG00000006031
ENSG00000164841
Transmembrane protein 74
Tissue enhanced
Detected in many
pituitary gland:
34.3
TMPRSS7
ENSSSCG00000025721
ENSG00000176040
Transmembrane serine protease 7
Tissue enhanced
Detected in some
brain:
4.4
choroid plexus:
5.1
ovary:
5.8
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