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Gene name
Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Male glands
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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782 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TNPO2
ENSSSCG00000013726
ENSG00000105576
Transportin 2
Low tissue specificity
Detected in all
TP53RK
ENSSSCG00000007452
ENSG00000172315
TP53 regulating kinase
Low tissue specificity
Detected in all
TPBGL
ENSSSCG00000033899
ENSG00000261594
Trophoblast glycoprotein like
Tissue enhanced
Detected in some
adipose tissue:
6.6
brain:
8.3
pineal gland:
9.7
retina:
7.7
testis:
7.1
TRIM46
ENSSSCG00000006526
ENSG00000163462
Tripartite motif containing 46
Tissue enhanced
Detected in many
brain:
16.5
TRPC4
ENSSSCG00000009362
ENSG00000133107
Short transient receptor potential channel 4
Tissue enhanced
Detected in many
brain:
20.4
smooth muscle:
35.1
TRPM2
ENSSSCG00000023762
ENSG00000142185
Transient receptor potential cation channel subfamily M member 2
Tissue enhanced
Detected in many
epididymis:
28.4
TSPOAP1
ENSSSCG00000017638
ENSG00000005379
TSPO associated protein 1
Tissue enhanced
Detected in many
brain:
20.1
TTC9B
ENSSSCG00000002991
ENSG00000174521
Tetratricopeptide repeat domain 9B
Tissue enhanced
Detected in many
brain:
20.1
TTL
ENSSSCG00000008097
ENSG00000114999
Tubulin--tyrosine ligase
Low tissue specificity
Detected in all
TUB
ENSSSCG00000014581
ENSG00000166402
Tubby bipartite transcription factor
Tissue enhanced
Detected in many
stomach:
57.3
TVP23A
ENSSSCG00000027101
ENSG00000166676
Trans-golgi network vesicle protein 23 homolog A
Tissue enhanced
Detected in many
brain:
20.6
TYW5
ENSSSCG00000016087
ENSG00000162971
TRNA-yW synthesizing protein 5
Low tissue specificity
Detected in all
UBE2QL1
ENSSSCG00000035825
ENSG00000215218
Ubiquitin conjugating enzyme E2 Q family like 1
Tissue enhanced
Detected in all
brain:
29.4
UBXN2B
ENSSSCG00000006239
ENSG00000215114
UBX domain protein 2B
Low tissue specificity
Detected in all
UNC5A
ENSSSCG00000014049
ENSG00000113763
Unc-5 netrin receptor A
Low tissue specificity
Detected in all
USP12
ENSSSCG00000009302
ENSG00000152484
Ubiquitin specific peptidase 12
Low tissue specificity
Detected in all
USP21
ENSSSCG00000006362
ENSG00000143258
Ubiquitin specific peptidase 21
Low tissue specificity
Detected in all
VIP
ENSSSCG00000004078
ENSG00000146469
VIP peptides precursor
Group enriched
Detected in some
brain:
16.0
large intestine:
25.5
small intestine:
29.5
smooth muscle:
19.2
VOPP1
ENSSSCG00000032734
ENSG00000154978
VOPP1, WBP1/VOPP1 family member
Tissue enhanced
Detected in many
retina:
73.7
VWA5B2
ENSSSCG00000026185
ENSG00000145198
Von Willebrand factor A domain containing 5B2
Group enriched
Detected in some
adrenal gland:
56.0
brain:
16.4
VWDE
ENSSSCG00000022543
ENSG00000146530
Von Willebrand factor D and EGF domains
Tissue enhanced
Detected in some
brain:
6.9
kidney:
12.9
penis:
7.7
pituitary gland:
6.4
smooth muscle:
5.7
WNT1
ENSSSCG00000000183
ENSG00000125084
Wnt family member 1
Tissue enriched
Detected in some
ovary:
27.0
WNT2
ENSSSCG00000016628
ENSG00000105989
Wnt family member 2
Tissue enhanced
Detected in many
cervix:
34.9
cornea:
18.2
endometrium:
13.8
XKR7
ENSSSCG00000007238
ENSG00000260903
XK related 7
Tissue enriched
Detected in some
brain:
21.8
YPEL1
ENSSSCG00000037288
ENSG00000100027
Yippee like 1
Group enriched
Detected in many
brain:
26.2
testis:
103.5
ZBTB18
ENSSSCG00000035213
ENSG00000179456
Zinc finger and BTB domain containing 18
Tissue enhanced
Detected in all
brain:
82.4
male glands:
34.1
ZC3H12B
ENSSSCG00000012367
ENSG00000102053
Zinc finger CCCH-type containing 12B
Tissue enhanced
Detected in some
brain:
10.0
choroid plexus:
7.1
ZNF169
ENSSSCG00000032834
ENSG00000175787
Zinc finger protein 169
Low tissue specificity
Detected in all
ZNF280B
ENSSSCG00000033879
ENSG00000275004
Zinc finger protein 280B
Low tissue specificity
Detected in all
ZNF711
ENSSSCG00000021601
ENSG00000147180
Zinc finger protein 711
Tissue enriched
Detected in many
adrenal gland:
114.9
ZNF804B
ENSSSCG00000015300
ENSG00000182348
Zinc finger protein 804B
Tissue enhanced
Detected in some
brain:
13.9
heart:
7.0
pineal gland:
8.4
retina:
23.0
testis:
5.7
ZNRF3
ENSSSCG00000009971
ENSG00000183579
Zinc and ring finger 3
Tissue enhanced
Detected in all
epididymis:
34.9
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