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Keyword
Chromosome
1
2
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7
8
9
10
11
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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782 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RASGEF1B
ENSSSCG00000029507
ENSG00000138670
Ras-GEF domain-containing family member 1B
Low tissue specificity
Detected in all
RASGRP1
ENSSSCG00000004791
ENSG00000172575
RAS guanyl releasing protein 1
Tissue enhanced
Detected in many
brain:
41.1
lymphoid tissue:
37.1
RASL10A
ENSSSCG00000009977
ENSG00000100276
RAS like family 10 member A
Tissue enriched
Detected in some
brain:
26.4
RBFOX1
ENSSSCG00000007917
ENSG00000078328
RNA binding fox-1 homolog 1
Tissue enhanced
Detected in some
brain:
53.7
ductus deferens:
21.4
pineal gland:
18.5
skeletal muscle:
30.0
RBFOX3
ENSSSCG00000039498
ENSG00000167281
RNA binding fox-1 homolog 3
Tissue enriched
Detected in some
brain:
43.4
RGS14
ENSSSCG00000014039
ENSG00000169220
Regulator of G protein signaling 14
Tissue enhanced
Detected in all
brain:
54.2
lymphoid tissue:
23.2
RGS4
ENSSSCG00000006335
ENSG00000117152
Regulator of G-protein signaling 4
Group enriched
Detected in many
brain:
76.6
male glands:
55.6
RGS9
ENSSSCG00000035402
ENSG00000108370
Regulator of G protein signaling 9
Group enriched
Detected in many
brain:
42.3
retina:
40.0
RHEBL1
ENSSSCG00000000186
ENSG00000167550
RHEB like 1
Low tissue specificity
Detected in some
RHOBTB2
ENSSSCG00000009638
ENSG00000008853
Rho related BTB domain containing 2
Tissue enhanced
Detected in all
kidney:
56.7
RLBP1
ENSSSCG00000001836
ENSG00000140522
Retinaldehyde binding protein 1
Tissue enhanced
Detected in all
brain:
29.0
retina:
67.7
RNF112
ENSSSCG00000034609
ENSG00000128482
Ring finger protein 112
Tissue enhanced
Detected in all
brain:
18.2
RNF165
ENSSSCG00000004502
ENSG00000141622
Ring finger protein 165
Tissue enhanced
Detected in many
brain:
17.2
RNF212B
ENSSSCG00000026237
ENSG00000215277
Ring finger protein 212B
Group enriched
Detected in some
brain:
11.6
kidney:
10.0
testis:
10.4
RPE65
ENSSSCG00000003794
ENSG00000116745
RPE65, retinoid isomerohydrolase
Group enriched
Detected in some
brain:
15.5
pituitary gland:
15.7
retina:
32.9
RPP30
ENSSSCG00000010460
ENSG00000148688
Ribonuclease P/MRP subunit p30
Low tissue specificity
Detected in all
RPRML
ENSSSCG00000017320
ENSG00000179673
Reprimo like
Tissue enriched
Detected in some
brain:
82.7
RPS6KA5
ENSSSCG00000024377
ENSG00000100784
Ribosomal protein S6 kinase A5
Low tissue specificity
Detected in all
RSPO2
ENSSSCG00000006034
ENSG00000147655
R-spondin-2 precursor
Tissue enhanced
Detected in many
brain:
21.1
gallbladder:
17.4
synovial tissue:
11.3
upper respiratory system:
13.7
RTL5
ENSSSCG00000020876
ENSG00000242732
Retrotransposon Gag like 5
Group enriched
Detected in many
ductus deferens:
69.6
epididymis:
127.0
male glands:
72.3
RTN4R
ENSSSCG00000034656
ENSG00000040608
Reticulon 4 receptor
Group enriched
Detected in some
brain:
15.4
male glands:
8.8
RTN4RL1
ENSSSCG00000039780
ENSG00000185924
Reticulon 4 receptor like 1
Low tissue specificity
Detected in many
RTN4RL2
ENSSSCG00000040919
ENSG00000186907
Reticulon 4 receptor like 2
Low tissue specificity
Detected in all
SACS
ENSSSCG00000035493
ENSG00000151835
Sacsin molecular chaperone
Tissue enhanced
Detected in all
brain:
25.8
SAMD12
ENSSSCG00000036553
ENSG00000177570
Sterile alpha motif domain containing 12
Tissue enhanced
Detected in many
brain:
27.0
SATB2
ENSSSCG00000021657
ENSG00000119042
SATB homeobox 2
Tissue enhanced
Detected in many
brain:
18.1
large intestine:
63.2
SCAI
ENSSSCG00000005598
ENSG00000173611
Suppressor of cancer cell invasion
Low tissue specificity
Detected in all
SDCBP2
ENSSSCG00000007189
ENSG00000125775
Syntenin-2
Tissue enhanced
Detected in many
endometrium:
20.0
gallbladder:
34.5
large intestine:
20.9
SDR42E2
ENSSSCG00000007842
ENSG00000183921
Short chain dehydrogenase/reductase family 42E, member 2
Tissue enhanced
Detected in many
fallopian tube:
10.7
SEMA4F
ENSSSCG00000008262
ENSG00000135622
Ssemaphorin 4F
Low tissue specificity
Detected in many
SEMA6B
ENSSSCG00000035176
ENSG00000167680
Semaphorin 6B
Low tissue specificity
Detected in all
SERTM1
ENSSSCG00000040557
ENSG00000180440
Serine rich and transmembrane domain containing 1
Tissue enhanced
Detected in all
brain:
26.6
SGSM2
ENSSSCG00000017829
ENSG00000141258
Small G protein signaling modulator 2
Low tissue specificity
Detected in all
SH2D5
ENSSSCG00000003509
ENSG00000189410
SH2 domain containing 5
Tissue enriched
Detected in some
brain:
21.4
SHC3
ENSSSCG00000039841
ENSG00000148082
SHC adaptor protein 3
Tissue enhanced
Detected in many
brain:
28.0
SHD
ENSSSCG00000013503
ENSG00000105251
Src homology 2 domain containing transforming protein D
Tissue enhanced
Detected in many
brain:
10.7
heart:
34.3
SHISA7
ENSSSCG00000035924
ENSG00000187902
Shisa family member 7
Tissue enhanced
Detected in some
brain:
18.4
pituitary gland:
7.6
SHISAL1
ENSSSCG00000039522
ENSG00000138944
Shisa like 1
Tissue enhanced
Detected in many
brain:
31.9
SIPA1L1
ENSSSCG00000002332
ENSG00000197555
Signal induced proliferation associated 1 like 1
Low tissue specificity
Detected in all
SLC12A6
ENSSSCG00000002243
ENSG00000140199
Solute carrier family 12 member 6
Low tissue specificity
Detected in all
SLC17A7
ENSSSCG00000003170
ENSG00000104888
Solute carrier family 17 member 7
Group enriched
Detected in some
brain:
88.7
pineal gland:
61.7
retina:
78.0
SLC17A8
ENSSSCG00000038946
ENSG00000179520
Solute carrier family 17 member 8
Tissue enhanced
Detected in some
brain:
9.6
liver:
6.6
retina:
6.0
SLC25A22
ENSSSCG00000012844
ENSG00000177542
Solute carrier family 25 member 22
Tissue enhanced
Detected in all
brain:
43.3
SLC25A23
ENSSSCG00000013550
ENSG00000125648
Calcium-binding mitochondrial carrier protein SCaMC-3
Tissue enhanced
Detected in all
brain:
43.6
smooth muscle:
39.6
SLC26A5
ENSSSCG00000015425
ENSG00000170615
Prestin
Tissue enriched
Detected in some
brain:
16.9
SLC29A2
ENSSSCG00000012941
ENSG00000174669
Solute carrier family 29 member 2
Tissue enhanced
Detected in many
retina:
25.3
skeletal muscle:
13.3
SLC30A3
ENSSSCG00000021534
ENSG00000115194
Zinc transporter 3
Tissue enhanced
Detected in many
brain:
33.7
thyroid gland:
93.7
SLC30A4
ENSSSCG00000004668
ENSG00000104154
Zinc transporter 4
Low tissue specificity
Detected in many
SLC35B4
ENSSSCG00000016541
ENSG00000205060
Solute carrier family 35 member B4
Low tissue specificity
Detected in all
SLC35D3
ENSSSCG00000004159
ENSG00000182747
Solute carrier family 35 member D3
Group enriched
Detected in some
adrenal gland:
11.4
brain:
24.9
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