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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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782 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
OPRD1
ENSSSCG00000027401
ENSG00000116329
Opioid receptor delta 1
Tissue enriched
Detected in some
thyroid gland:
34.7
OPRL1
ENSSSCG00000031228
ENSG00000125510
Nociceptin receptor
Tissue enhanced
Detected in many
adipose tissue:
20.5
aorta:
10.8
bone marrow:
10.0
brain:
15.0
OR1I1
ENSSSCG00000013828
ENSG00000094661
Olfactory receptor family 1 subfamily I member 1
Tissue enhanced
Detected in some
epididymis:
4.3
fallopian tube:
4.0
OTOF
ENSSSCG00000037751
ENSG00000115155
Otoferlin
Tissue enriched
Detected in some
brain:
15.1
OTOL1
ENSSSCG00000022248
ENSG00000182447
Otolin 1
Group enriched
Detected in some
brain:
4.7
retina:
2.1
urinary bladder:
1.6
OVCH1
ENSSSCG00000000540
ENSG00000187950
Ovochymase 1
Tissue enhanced
Detected in many
brain:
8.9
male glands:
8.3
PAK1
ENSSSCG00000014878
ENSG00000149269
P21 (RAC1) activated kinase 1
Tissue enriched
Detected in all
brain:
75.9
PAK5
ENSSSCG00000007061
ENSG00000101349
P21 (RAC1) activated kinase 5
Tissue enhanced
Detected in some
brain:
17.3
ovary:
5.2
retina:
12.9
PAMR1
ENSSSCG00000028338
ENSG00000149090
Inactive serine protease PAMR1 precursor
Tissue enhanced
Detected in many
brain:
29.4
PANX1
ENSSSCG00000032360
ENSG00000110218
Pannexin 1
Tissue enhanced
Detected in many
ovary:
15.3
PCDH8
ENSSSCG00000009445
ENSG00000136099
Protocadherin 8
Tissue enhanced
Detected in some
brain:
22.3
retina:
7.1
testis:
5.1
PDE1A
ENSSSCG00000023924
ENSG00000115252
Phosphodiesterase 1A
Tissue enhanced
Detected in many
brain:
31.9
thyroid gland:
38.6
PDE1B
ENSSSCG00000000297
ENSG00000123360
Phosphodiesterase 1B
Tissue enriched
Detected in many
brain:
80.9
PEAK3
ENSSSCG00000013461
ENSG00000188305
PEAK family member 3
Tissue enhanced
Detected in many
brain:
13.4
PHACTR1
ENSSSCG00000001052
ENSG00000112137
Phosphatase and actin regulator 1
Tissue enriched
Detected in many
brain:
66.8
PHYHIP
ENSSSCG00000009621
ENSG00000168490
Phytanoyl-CoA 2-hydroxylase interacting protein
Tissue enriched
Detected in many
brain:
63.3
PIGZ
ENSSSCG00000029291
ENSG00000119227
Phosphatidylinositol glycan anchor biosynthesis class Z
Tissue enhanced
Detected in all
lymphoid tissue:
17.4
PIP5K1C
ENSSSCG00000013490
ENSG00000186111
Phosphatidylinositol-4-phosphate 5-kinase type 1 gamma
Tissue enhanced
Detected in all
brain:
50.9
PITPNC1
ENSSSCG00000017274
ENSG00000154217
Cytoplasmic phosphatidylinositol transfer protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
103.0
PITPNM3
ENSSSCG00000017892
ENSG00000091622
PITPNM family member 3
Tissue enhanced
Detected in many
adrenal gland:
28.9
male glands:
32.4
retina:
34.6
PJA1
ENSSSCG00000024463
ENSG00000181191
Praja ring finger ubiquitin ligase 1
Tissue enhanced
Detected in all
epididymis:
78.8
PLA2G4E
ENSSSCG00000037292
ENSG00000188089
Phospholipase A2 group IVE
Tissue enhanced
Detected in some
brain:
9.5
skin:
38.0
PLCH2
ENSSSCG00000029744
ENSG00000149527
Phospholipase C eta 2
Tissue enhanced
Detected in many
brain:
20.1
retina:
21.4
skin:
33.1
urinary bladder:
16.6
PLXNA4
ENSSSCG00000021562
ENSG00000221866
Plexin A4
Tissue enhanced
Detected in many
brain:
30.1
penis:
32.8
PNMA8C
ENSSSCG00000031469
ENSG00000277531
PNMA family member 8C
Tissue enhanced
Detected in many
brain:
6.2
epididymis:
13.1
PORCN
ENSSSCG00000024793
ENSG00000102312
Porcupine O-acyltransferase
Low tissue specificity
Detected in all
POU3F1
ENSSSCG00000003646
ENSG00000185668
POU class 3 homeobox 1
Tissue enhanced
Detected in some
skin:
10.9
vagus nerve:
36.6
PPFIA3
ENSSSCG00000022324
ENSG00000177380
PTPRF interacting protein alpha 3
Tissue enhanced
Detected in all
brain:
23.8
PPFIA4
ENSSSCG00000015474
ENSG00000143847
PTPRF interacting protein alpha 4
Group enriched
Detected in many
brain:
41.9
heart:
19.8
PPP1R17
ENSSSCG00000033535
ENSG00000106341
Protein phosphatase 1 regulatory subunit 17
Tissue enhanced
Detected in many
adrenal gland:
43.6
brain:
71.3
pineal gland:
69.3
salivary gland:
30.4
PPP1R7
ENSSSCG00000016376
ENSG00000115685
Protein phosphatase 1 regulatory subunit 7
Tissue enhanced
Detected in all
brain:
28.2
PPP3R1
ENSSSCG00000036115
ENSG00000221823
Protein phosphatase 3 regulatory subunit B, alpha
Low tissue specificity
Detected in all
PRDM8
ENSSSCG00000036555
ENSG00000152784
PR/SET domain 8
Low tissue specificity
Detected in many
PRKAR2B
ENSSSCG00000037706
ENSG00000005249
Protein kinase cAMP-dependent type II regulatory subunit beta
Tissue enhanced
Detected in many
adipose tissue:
55.9
PRKCB
ENSSSCG00000033674
ENSG00000166501
Protein kinase C beta
Tissue enhanced
Detected in many
brain:
61.4
PRKCE
ENSSSCG00000008444
ENSG00000171132
Protein kinase C epsilon
Tissue enhanced
Detected in many
brain:
44.3
PRKCG
ENSSSCG00000003256
ENSG00000126583
Protein kinase C gamma
Tissue enriched
Detected in some
brain:
56.1
PRKCZ
ENSSSCG00000030361
ENSG00000067606
Protein kinase C zeta type
Tissue enhanced
Detected in many
brain:
43.5
PRMT8
ENSSSCG00000000730
ENSG00000111218
Protein arginine methyltransferase 8
Tissue enhanced
Detected in some
brain:
15.2
retina:
46.7
PROX2
ENSSSCG00000002373
ENSG00000119608
Prospero homeobox 2
Tissue enhanced
Detected in some
lymphoid tissue:
4.4
PRSS56
ENSSSCG00000016286
ENSG00000237412
Serine protease 56
Tissue enriched
Detected in some
brain:
25.4
PSD
ENSSSCG00000010581
ENSG00000059915
Pleckstrin and Sec7 domain containing
Tissue enhanced
Detected in many
brain:
44.3
retina:
30.4
smooth muscle:
23.7
PSRC1
ENSSSCG00000036975
ENSG00000134222
Proline and serine rich coiled-coil 1
Tissue enhanced
Detected in many
epididymis:
23.4
PTH2
ENSSSCG00000003171
ENSG00000142538
Parathyroid hormone 2
Tissue enhanced
Detected in some
brain:
21.4
retina:
28.3
testis:
19.5
PTPRR
ENSSSCG00000025969
ENSG00000153233
Protein tyrosine phosphatase, receptor type R
Tissue enhanced
Detected in many
retina:
40.8
R3HDM1
ENSSSCG00000015692
ENSG00000048991
R3H domain containing 1
Tissue enhanced
Detected in all
brain:
58.4
RAB11FIP2
ENSSSCG00000010672
ENSG00000107560
RAB11 family interacting protein 2
Low tissue specificity
Detected in all
RAP1GAP2
ENSSSCG00000034858
ENSG00000132359
RAP1 GTPase activating protein 2
Tissue enhanced
Detected in many
brain:
34.0
RAPGEF4
ENSSSCG00000015959
ENSG00000091428
Rap guanine nucleotide exchange factor 4
Tissue enhanced
Detected in many
adrenal gland:
41.6
brain:
35.4
RASGEF1A
ENSSSCG00000010201
ENSG00000198915
RasGEF domain family member 1A
Group enriched
Detected in all
brain:
22.9
vagus nerve:
14.0
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