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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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782 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000040249
Low tissue specificity
Detected in all
na
ENSSSCG00000040258
Tissue enriched
Detected in some
brain:
13.0
na
ENSSSCG00000040289
Tissue enhanced
Detected in many
cervix:
3.6
na
ENSSSCG00000040326
Tissue enriched
Detected in some
brain:
19.0
na
ENSSSCG00000040343
Tissue enriched
Detected in single
brain:
12.9
na
ENSSSCG00000040417
Tissue enhanced
Detected in some
brain:
18.0
pituitary gland:
7.8
retina:
6.6
na
ENSSSCG00000040423
ENSG00000125868
Tissue enhanced
Detected in some
brain:
3.2
pineal gland:
3.1
testis:
1.0
na
ENSSSCG00000040474
Tissue enhanced
Detected in many
brain:
23.6
na
ENSSSCG00000040477
Tissue enriched
Detected in single
brain:
3.0
na
ENSSSCG00000040499
Tissue enhanced
Detected in some
brain:
8.2
retina:
2.6
na
ENSSSCG00000040508
Tissue enriched
Detected in some
brain:
13.9
na
ENSSSCG00000040545
Tissue enhanced
Detected in many
brain:
18.9
na
ENSSSCG00000040576
Tissue enhanced
Detected in many
brain:
25.6
na
ENSSSCG00000040590
Group enriched
Detected in some
brain:
7.7
stomach:
2.3
na
ENSSSCG00000040609
ENSG00000168828
Tissue enhanced
Detected in some
brain:
6.0
retina:
1.5
testis:
1.2
na
ENSSSCG00000040618
Tissue enhanced
Detected in some
brain:
6.7
retina:
10.2
na
ENSSSCG00000040650
ENSG00000284299
Tissue enriched
Detected in some
brain:
24.8
na
ENSSSCG00000040852
Tissue enhanced
Detected in many
brain:
15.8
cartilage:
8.4
retina:
10.7
na
ENSSSCG00000040960
Tissue enhanced
Detected in many
kidney:
10.3
na
ENSSSCG00000040982
Tissue enhanced
Detected in some
brain:
15.0
choroid plexus:
10.4
retina:
11.8
NANOS2
ENSSSCG00000003096
ENSG00000188425
Nanos C2HC-type zinc finger 2
Tissue enhanced
Detected in some
brain:
1.9
cartilage:
4.1
NDFIP2
ENSSSCG00000009480
ENSG00000102471
Nedd4 family interacting protein 2
Tissue enhanced
Detected in all
brain:
45.1
NECAB1
ENSSSCG00000031424
ENSG00000123119
N-terminal EF-hand calcium binding protein 1
Group enriched
Detected in some
brain:
22.1
epididymis:
9.4
NETO1
ENSSSCG00000027654
ENSG00000166342
Neuropilin and tolloid like 1
Group enriched
Detected in some
brain:
33.5
retina:
18.4
NEUROD1
ENSSSCG00000016011
ENSG00000162992
Neuronal differentiation 1
Group enriched
Detected in some
brain:
90.5
pineal gland:
64.9
retina:
43.6
NEUROD2
ENSSSCG00000033583
ENSG00000171532
Neuronal differentiation 2
Tissue enriched
Detected in some
brain:
43.0
NEUROD6
ENSSSCG00000039501
ENSG00000164600
Neuronal differentiation 6
Tissue enriched
Detected in single
brain:
49.9
NGEF
ENSSSCG00000016295
ENSG00000066248
Neuronal guanine nucleotide exchange factor
Group enriched
Detected in many
brain:
40.4
cartilage:
54.8
NIM1K
ENSSSCG00000016873
ENSG00000177453
NIM1 serine/threonine protein kinase
Low tissue specificity
Detected in many
NKAIN4
ENSSSCG00000036544
ENSG00000101198
Sodium/potassium transporting ATPase interacting 4
Group enriched
Detected in some
brain:
6.4
epididymis:
14.3
lens:
9.7
NMT2
ENSSSCG00000026499
ENSG00000152465
N-myristoyltransferase 2
Group enriched
Detected in many
brain:
19.7
liver:
46.5
NOCT
ENSSSCG00000024596
ENSG00000151014
Nocturnin
Low tissue specificity
Detected in all
NOL4
ENSSSCG00000003737
ENSG00000101746
Nucleolar protein 4
Tissue enhanced
Detected in all
brain:
31.4
pituitary gland:
33.5
NPAS1
ENSSSCG00000003108
ENSG00000130751
Neuronal PAS domain protein 1
Tissue enhanced
Detected in many
brain:
7.0
epididymis:
11.5
skin:
8.5
NPB
ENSSSCG00000035837
ENSG00000183979
Neuropeptide B
Tissue enriched
Detected in many
epididymis:
75.9
NPBWR1
ENSSSCG00000021483
ENSG00000183729
Neuropeptides B and W receptor 1
Tissue enhanced
Detected in some
brain:
9.4
epididymis:
14.4
ovary:
31.8
salivary gland:
7.4
NPHS1
ENSSSCG00000029284
ENSG00000161270
NPHS1, nephrin
Tissue enriched
Detected in some
vagus nerve:
34.0
NPS
ENSSSCG00000010751
ENSG00000214285
Neuropeptide S
Tissue enriched
Detected in single
brain:
13.1
NPTX1
ENSSSCG00000017144
ENSG00000171246
Neuronal pentraxin 1
Tissue enhanced
Detected in many
brain:
48.5
testis:
17.2
NPY
ENSSSCG00000016718
ENSG00000122585
Pro-neuropeptide Y precursor
Group enriched
Detected in some
brain:
47.5
lymphoid tissue:
17.8
NPY1R
ENSSSCG00000008888
ENSG00000164128
Neuropeptide Y receptor type 1
Tissue enhanced
Detected in all
choroid plexus:
27.1
ovary:
53.5
NPY5R
ENSSSCG00000008889
ENSG00000164129
Neuropeptide Y receptor type 5
Group enriched
Detected in some
brain:
10.6
ovary:
4.7
synovial tissue:
3.7
NR2E1
ENSSSCG00000004384
ENSG00000112333
Nuclear receptor subfamily 2 group E member 1
Tissue enhanced
Detected in some
brain:
16.2
choroid plexus:
9.7
lens:
29.7
retina:
9.6
NRGN
ENSSSCG00000039322
ENSG00000154146
Neurogranin
Tissue enriched
Detected in many
brain:
320.1
NRIP2
ENSSSCG00000000741
ENSG00000053702
Nuclear receptor interacting protein 2
Low tissue specificity
Detected in many
NT5DC3
ENSSSCG00000000853
ENSG00000111696
5'-nucleotidase domain containing 3
Tissue enhanced
Detected in many
brain:
42.7
NTSR1
ENSSSCG00000038278
ENSG00000101188
Neurotensin receptor 1
Group enriched
Detected in some
brain:
30.7
epididymis:
22.6
lymphoid tissue:
15.9
NUP93
ENSSSCG00000025830
ENSG00000102900
Nuclear pore complex protein Nup93
Low tissue specificity
Detected in all
NWD2
ENSSSCG00000008770
ENSG00000174145
NACHT and WD repeat domain containing 2
Tissue enhanced
Detected in many
brain:
20.4
male glands:
11.4
pituitary gland:
21.0
NXPH3
ENSSSCG00000017552
ENSG00000182575
Neurexophilin 3
Group enriched
Detected in many
brain:
33.1
cervix:
29.4
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