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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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836 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CERS2
ENSSSCG00000006644
ENSG00000143418
Ceramide synthase 2
Tissue enhanced
Detected in all
brain:
92.5
CHCHD10
ENSSSCG00000010073
ENSG00000250479
Coiled-coil-helix-coiled-coil-helix domain containing 10
Tissue enhanced
Detected in all
heart:
175.7
skeletal muscle:
132.4
CHCHD5
ENSSSCG00000008094
ENSG00000125611
Coiled-coil-helix-coiled-coil-helix domain containing 5
Tissue enhanced
Detected in all
lens:
70.4
testis:
52.8
CHMP4B
ENSSSCG00000007272
ENSG00000101421
Charged multivesicular body protein 4B
Low tissue specificity
Detected in all
CHMP7
ENSSSCG00000033113
ENSG00000147457
Charged multivesicular body protein 7
Low tissue specificity
Detected in all
CHPF
ENSSSCG00000021610
ENSG00000123989
Chondroitin polymerizing factor
Tissue enhanced
Detected in all
cartilage:
72.9
CINP
ENSSSCG00000002530
ENSG00000100865
Cyclin dependent kinase 2 interacting protein
Tissue enhanced
Detected in all
lens:
67.8
CISD3
ENSSSCG00000022187
ENSG00000277972
CDGSH iron sulfur domain 3
Low tissue specificity
Detected in all
CLPP
ENSSSCG00000038079
ENSG00000125656
Caseinolytic mitochondrial matrix peptidase proteolytic subunit
Low tissue specificity
Detected in all
CLPX
ENSSSCG00000004927
ENSG00000166855
Caseinolytic mitochondrial matrix peptidase chaperone subunit
Low tissue specificity
Detected in all
CMBL
ENSSSCG00000039763
ENSG00000164237
Carboxymethylenebutenolidase homolog
Tissue enhanced
Detected in all
liver:
39.1
CMC2
ENSSSCG00000032060
ENSG00000103121
C-X9-C motif containing 2
Tissue enhanced
Detected in all
choroid plexus:
49.6
CNBP
ENSSSCG00000040879
ENSG00000169714
CCHC-type zinc finger nucleic acid binding protein
Low tissue specificity
Detected in all
COA3
ENSSSCG00000017388
ENSG00000183978
Cytochrome c oxidase assembly factor 3
Low tissue specificity
Detected in all
COMMD5
ENSSSCG00000035123
ENSG00000170619
COMM domain containing 5
Low tissue specificity
Detected in all
COMT
ENSSSCG00000010132
ENSG00000093010
Catechol O-methyltransferase
Tissue enhanced
Detected in all
liver:
118.4
COPS3
ENSSSCG00000018051
ENSG00000141030
COP9 signalosome complex subunit 3
Tissue enhanced
Detected in all
testis:
108.2
COPS7A
ENSSSCG00000000691
ENSG00000111652
COP9 signalosome subunit 7A
Low tissue specificity
Detected in all
COQ5
ENSSSCG00000009903
ENSG00000110871
Coenzyme Q5, methyltransferase
Low tissue specificity
Detected in all
COQ6
ENSSSCG00000002354
ENSG00000119723
Coenzyme Q6, monooxygenase
Low tissue specificity
Detected in all
COQ7
ENSSSCG00000034655
ENSG00000167186
Coenzyme Q7, hydroxylase
Low tissue specificity
Detected in all
COQ9
ENSSSCG00000025284
ENSG00000088682
Coenzyme Q9
Tissue enhanced
Detected in all
heart:
71.7
skeletal muscle:
80.6
CORO1C
ENSSSCG00000009944
ENSG00000110880
Coronin 1C
Tissue enhanced
Detected in all
lens:
85.2
COX4I1
ENSSSCG00000029034
ENSG00000131143
Cytochrome c oxidase subunit 4I1
Tissue enhanced
Detected in all
heart:
237.8
COX5A
ENSSSCG00000024316
ENSG00000178741
Cytochrome c oxidase subunit 5A
Tissue enhanced
Detected in all
heart:
90.1
skeletal muscle:
146.7
COX5B
ENSSSCG00000008195
ENSG00000135940
Cytochrome c oxidase subunit 5B, mitochondrial
Tissue enhanced
Detected in all
heart:
93.9
skeletal muscle:
105.6
COX6C
ENSSSCG00000006070
ENSG00000164919
Cytochrome c oxidase subunit 6C
Low tissue specificity
Detected in all
CPD
ENSSSCG00000017799
ENSG00000108582
Carboxypeptidase D
Tissue enhanced
Detected in all
male glands:
86.0
CREG1
ENSSSCG00000006308
ENSG00000143162
Cellular repressor of E1A stimulated genes 1
Tissue enhanced
Detected in all
male glands:
80.5
testis:
86.7
CRK
ENSSSCG00000033812
ENSG00000167193
Adapter molecule crk
Low tissue specificity
Detected in all
CRKL
ENSSSCG00000010095
ENSG00000099942
CRK like proto-oncogene, adaptor protein
Low tissue specificity
Detected in all
CRYZ
ENSSSCG00000003780
ENSG00000116791
Quinone oxidoreductase
Tissue enriched
Detected in all
lens:
275.6
CSDE1
ENSSSCG00000006752
ENSG00000009307
Cold shock domain containing E1
Low tissue specificity
Detected in all
CTSF
ENSSSCG00000038918
ENSG00000174080
Cathepsin F
Low tissue specificity
Detected in all
CUTA
ENSSSCG00000001512
ENSG00000112514
CutA divalent cation tolerance homolog
Tissue enhanced
Detected in all
lens:
76.5
CYB5R1
ENSSSCG00000010929
ENSG00000159348
Cytochrome b5 reductase 1
Tissue enhanced
Detected in all
heart:
24.6
skeletal muscle:
41.5
CYC1
ENSSSCG00000031918
ENSG00000179091
Cytochrome c1
Tissue enhanced
Detected in all
heart:
112.1
skeletal muscle:
120.4
CYCS
ENSSSCG00000016714
Cytochrome c
Tissue enhanced
Detected in all
heart:
71.0
skeletal muscle:
76.2
CYP2U1
ENSSSCG00000009151
ENSG00000155016
Cytochrome P450 family 2 subfamily U member 1
Low tissue specificity
Detected in all
CYP4V2
ENSSSCG00000032687
ENSG00000145476
Cytochrome P450 family 4 subfamily V member 2
Tissue enhanced
Detected in all
liver:
38.0
DCAF7
ENSSSCG00000017294
ENSG00000136485
DDB1 and CUL4 associated factor 7
Low tissue specificity
Detected in all
DCAKD
ENSSSCG00000017340
ENSG00000172992
Dephospho-CoA kinase domain containing
Low tissue specificity
Detected in all
DCTN2
ENSSSCG00000000444
ENSG00000175203
Dynactin subunit 2
Low tissue specificity
Detected in all
DDB1
ENSSSCG00000013094
ENSG00000167986
Damage specific DNA binding protein 1
Low tissue specificity
Detected in all
DDT
ENSSSCG00000035836
ENSG00000099977
D-dopachrome decarboxylase
Tissue enhanced
Detected in all
liver:
29.5
DDX28
ENSSSCG00000026038
ENSG00000182810
DEAD-box helicase 28
Tissue enhanced
Detected in all
testis:
39.1
DECR1
ENSSSCG00000006126
ENSG00000104325
2,4-dienoyl-CoA reductase, mitochondrial
Low tissue specificity
Detected in all
DEDD
ENSSSCG00000006365
ENSG00000158796
Death effector domain containing
Low tissue specificity
Detected in all
DEXI
ENSSSCG00000037224
ENSG00000182108
Dexi homolog
Tissue enhanced
Detected in all
heart:
103.1
DFFA
ENSSSCG00000003404
ENSG00000160049
DNA fragmentation factor subunit alpha
Low tissue specificity
Detected in all
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