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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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836 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ATP5PB
ENSSSCG00000037772
ENSG00000116459
ATP synthase peripheral stalk-membrane subunit b
Low tissue specificity
Detected in all
ATP5PO
ENSSSCG00000012042
ATP synthase subunit O, mitochondrial precursor
Tissue enhanced
Detected in all
skeletal muscle:
106.3
ATP6V1G1
ENSSSCG00000031577
ENSG00000136888
V-type proton ATPase subunit G 1
Low tissue specificity
Detected in all
ATPAF2
ENSSSCG00000028712
ENSG00000171953
ATP synthase mitochondrial F1 complex assembly factor 2
Low tissue specificity
Detected in all
AUH
ENSSSCG00000009591
ENSG00000148090
AU RNA binding methylglutaconyl-CoA hydratase
Low tissue specificity
Detected in all
AURKAIP1
ENSSSCG00000038474
ENSG00000175756
Aurora kinase A interacting protein 1
Low tissue specificity
Detected in all
AVPI1
ENSSSCG00000036824
ENSG00000119986
Arginine vasopressin induced 1
Tissue enhanced
Detected in all
adrenal gland:
34.4
ovary:
38.7
B3GAT3
ENSSSCG00000020809
ENSG00000149541
Beta-1,3-glucuronyltransferase 3
Low tissue specificity
Detected in all
B9D2
ENSSSCG00000003013
ENSG00000123810
B9 domain containing 2
Low tissue specificity
Detected in all
BABAM2
ENSSSCG00000026465
ENSG00000158019
BRISC and BRCA1 A complex member 2
Low tissue specificity
Detected in all
BCAP31
ENSSSCG00000012772
ENSG00000185825
B cell receptor associated protein 31
Low tissue specificity
Detected in all
BCCIP
ENSSSCG00000010743
ENSG00000107949
BRCA2 and CDKN1A interacting protein
Tissue enhanced
Detected in all
lens:
95.3
BCKDHB
ENSSSCG00000004465
ENSG00000083123
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
Tissue enhanced
Detected in all
testis:
70.0
BCKDK
ENSSSCG00000007763
ENSG00000103507
Branched chain ketoacid dehydrogenase kinase
Low tissue specificity
Detected in all
BCL7B
ENSSSCG00000007708
ENSG00000106635
BCL tumor suppressor 7B
Low tissue specificity
Detected in all
BLOC1S4
ENSSSCG00000030673
ENSG00000186222
Biogenesis of lysosomal organelles complex 1 subunit 4
Low tissue specificity
Detected in all
BNIP1
ENSSSCG00000016985
ENSG00000113734
BCL2 interacting protein 1
Low tissue specificity
Detected in all
BNIP3
ENSSSCG00000024388
ENSG00000176171
BCL2 interacting protein 3
Tissue enhanced
Detected in all
cartilage:
175.1
lens:
149.3
BOLA1
ENSSSCG00000006667
ENSG00000178096
BolA-like protein 1
Tissue enhanced
Detected in all
male glands:
31.8
BTBD1
ENSSSCG00000001801
ENSG00000064726
BTB domain containing 1
Tissue enhanced
Detected in all
heart:
54.2
skeletal muscle:
59.2
BUD23
ENSSSCG00000007713
ENSG00000071462
BUD23, rRNA methyltransferase and ribosome maturation factor
Tissue enhanced
Detected in all
lens:
71.2
BUD31
ENSSSCG00000007623
ENSG00000106245
BUD31 homolog
Low tissue specificity
Detected in all
C11orf54
ENSSSCG00000014948
ENSG00000182919
Ester hydrolase C11orf54 homolog
Low tissue specificity
Detected in all
C11orf68
ENSSSCG00000012966
ENSG00000175573
Chromosome 11 open reading frame 68
Low tissue specificity
Detected in all
C12orf10
ENSSSCG00000000267
ENSG00000139637
Chromosome 12 open reading frame 10
Low tissue specificity
Detected in all
C12orf73
ENSSSCG00000032910
ENSG00000204954
Chromosome 12 open reading frame 73
Low tissue specificity
Detected in all
C15orf61
ENSSSCG00000004954
ENSG00000189227
Chromosome 15 open reading frame 61
Tissue enhanced
Detected in many
lens:
69.9
C16orf72
ENSSSCG00000028454
ENSG00000182831
Chromosome 16 open reading frame 72
Low tissue specificity
Detected in all
C19orf12
ENSSSCG00000032153
ENSG00000131943
Chromosome 19 open reading frame 12
Low tissue specificity
Detected in all
C19orf53
ENSSSCG00000013757
ENSG00000104979
Chromosome 19 open reading frame 53
Low tissue specificity
Detected in all
C19orf70
ENSSSCG00000013524
ENSG00000174917
MICOS complex subunit MIC13 precursor
Low tissue specificity
Detected in all
C1orf123
ENSSSCG00000003850
ENSG00000162384
Chromosome 1 open reading frame 123
Low tissue specificity
Detected in all
C6orf203
ENSSSCG00000037985
ENSG00000130349
Chromosome 6 open reading frame 203
Low tissue specificity
Detected in all
C9orf40
ENSSSCG00000031382
ENSG00000135045
Chromosome 9 open reading frame 40
Low tissue specificity
Detected in all
CAPNS1
ENSSSCG00000030149
ENSG00000126247
Calpain small subunit 1
Low tissue specificity
Detected in all
CAT
ENSSSCG00000013302
ENSG00000121691
Catalase
Tissue enhanced
Detected in many
liver:
269.9
CCDC107
ENSSSCG00000005313
ENSG00000159884
Coiled-coil domain containing 107
Tissue enhanced
Detected in all
male glands:
305.8
CCDC124
ENSSSCG00000013891
ENSG00000007080
Coiled-coil domain containing 124
Low tissue specificity
Detected in all
CCDC127
ENSSSCG00000036783
ENSG00000164366
Coiled-coil domain-containing protein 127
Low tissue specificity
Detected in all
CCDC152
ENSSSCG00000016867
ENSG00000198865
Coiled-coil domain containing 152
Group enriched
Detected in some
brain:
5.1
liver:
17.7
testis:
17.7
CCDC51
ENSSSCG00000011350
ENSG00000164051
Coiled-coil domain containing 51
Low tissue specificity
Detected in all
CCNG1
ENSSSCG00000017024
ENSG00000113328
Cyclin-G1
Tissue enriched
Detected in all
lens:
343.5
CD302
ENSSSCG00000036050
ENSG00000241399
CD302 antigen
Low tissue specificity
Detected in many
CD320
ENSSSCG00000032833
ENSG00000167775
CD320 molecule
Tissue enhanced
Detected in all
fallopian tube:
35.4
male glands:
40.1
CDC34
ENSSSCG00000039640
ENSG00000099804
Cell division cycle 34
Tissue enhanced
Detected in all
lens:
142.6
skeletal muscle:
116.2
CDC37
ENSSSCG00000013647
ENSG00000105401
Hsp90 co-chaperone Cdc37
Low tissue specificity
Detected in all
CDIPT
ENSSSCG00000027629
ENSG00000103502
CDP-diacylglycerol--inositol 3-phosphatidyltransferase
Low tissue specificity
Detected in all
CDK4
ENSSSCG00000025092
ENSG00000135446
Cyclin-dependent kinase 4
Low tissue specificity
Detected in all
CDKN1B
ENSSSCG00000037144
ENSG00000111276
Cyclin-dependent kinase inhibitor 1B
Low tissue specificity
Detected in all
CDV3
ENSSSCG00000027294
ENSG00000091527
CDV3 homolog
Tissue enhanced
Detected in all
lens:
125.4
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