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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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836 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TIMM50
ENSSSCG00000026612
ENSG00000105197
Translocase of inner mitochondrial membrane 50
Low tissue specificity
Detected in all
TIMM8B
ENSSSCG00000023599
ENSG00000150779
Translocase of inner mitochondrial membrane 8 homolog B
Tissue enhanced
Detected in all
lens:
48.8
TMBIM6
ENSSSCG00000029652
ENSG00000139644
Bax inhibitor 1
Tissue enhanced
Detected in all
male glands:
173.0
TMEM135
ENSSSCG00000035619
ENSG00000166575
Transmembrane protein 135
Low tissue specificity
Detected in all
TMEM141
ENSSSCG00000005842
ENSG00000244187
Transmembrane protein 141
Low tissue specificity
Detected in all
TMEM147
ENSSSCG00000040012
ENSG00000105677
Transmembrane protein 147
Low tissue specificity
Detected in all
TMEM189
ENSSSCG00000027287
ENSG00000240849
Transmembrane protein 189
Tissue enhanced
Detected in all
ovary:
80.9
TMEM203
ENSSSCG00000034562
ENSG00000187713
Transmembrane protein 203
Low tissue specificity
Detected in all
TMEM205
ENSSSCG00000013622
ENSG00000105518
Transmembrane protein 205
Tissue enhanced
Detected in all
adrenal gland:
74.8
TMEM222
ENSSSCG00000023636
ENSG00000186501
Transmembrane protein 222
Low tissue specificity
Detected in all
TMEM250
ENSSSCG00000034024
ENSG00000238227
Transmembrane protein 250
Low tissue specificity
Detected in all
TMEM254
ENSSSCG00000024300
ENSG00000133678
Transmembrane protein 254
Tissue enhanced
Detected in all
salivary gland:
118.7
TMEM258
ENSSSCG00000027538
ENSG00000134825
Transmembrane protein 258
Low tissue specificity
Detected in all
TMEM35B
ENSSSCG00000032660
ENSG00000243749
Transmembrane protein 35B
Tissue enhanced
Detected in all
choroid plexus:
49.6
TMEM64
ENSSSCG00000040180
ENSG00000180694
Transmembrane protein 64
Tissue enhanced
Detected in all
epididymis:
60.4
TMEM70
ENSSSCG00000021628
ENSG00000175606
Transmembrane protein 70
Low tissue specificity
Detected in all
TMEM9B
ENSSSCG00000014577
ENSG00000175348
TMEM9 domain family member B
Low tissue specificity
Detected in all
TOMM40
ENSSSCG00000003089
ENSG00000130204
Mitochondrial import receptor subunit TOM40 homolog
Low tissue specificity
Detected in all
TOMM7
ENSSSCG00000015384
ENSG00000196683
Mitochondrial import receptor subunit TOM7 homolog
Low tissue specificity
Detected in all
TPI1
ENSSSCG00000000685
ENSG00000111669
Triosephosphate isomerase
Tissue enhanced
Detected in all
lens:
150.6
skeletal muscle:
254.6
TPST1
ENSSSCG00000007737
ENSG00000169902
Protein-tyrosine sulfotransferase 1
Low tissue specificity
Detected in all
TRAP1
ENSSSCG00000007952
ENSG00000126602
Heat shock protein 75 kDa, mitochondrial
Low tissue specificity
Detected in all
TRAPPC1
ENSSSCG00000029679
ENSG00000170043
Trafficking protein particle complex 1
Low tissue specificity
Detected in all
TRAPPC5
ENSSSCG00000013573
ENSG00000181029
Trafficking protein particle complex 5
Tissue enhanced
Detected in all
male glands:
121.9
TREX1
ENSSSCG00000011358
ENSG00000213689
Three prime repair exonuclease 1
Tissue enhanced
Detected in all
lens:
42.0
TRIR
ENSSSCG00000013727
ENSG00000123144
Telomerase RNA component interacting RNase
Low tissue specificity
Detected in all
TRMT112
ENSSSCG00000013029
ENSG00000173113
TRNA methyltransferase subunit 11-2
Tissue enhanced
Detected in all
lens:
95.8
TRPC4AP
ENSSSCG00000007289
ENSG00000100991
Transient receptor potential cation channel subfamily C member 4 associated protein
Low tissue specificity
Detected in all
TRPT1
ENSSSCG00000013040
ENSG00000149743
TRNA phosphotransferase 1
Low tissue specificity
Detected in all
TRUB2
ENSSSCG00000005645
ENSG00000167112
TruB pseudouridine synthase family member 2
Low tissue specificity
Detected in all
TSFM
ENSSSCG00000037767
ENSG00000123297
Ts translation elongation factor, mitochondrial
Low tissue specificity
Detected in all
TSPAN6
ENSSSCG00000012481
ENSG00000000003
Tetraspanin-6
Tissue enriched
Detected in many
testis:
106.4
TSR2
ENSSSCG00000012334
ENSG00000158526
TSR2, ribosome maturation factor
Low tissue specificity
Detected in all
TSR3
ENSSSCG00000008030
ENSG00000007520
TSR3, acp transferase ribosome maturation factor
Low tissue specificity
Detected in all
TST
ENSSSCG00000000133
ENSG00000128311
Thiosulfate sulfurtransferase
Tissue enhanced
Detected in all
liver:
69.4
TUFM
ENSSSCG00000007803
ENSG00000178952
Tu translation elongation factor, mitochondrial
Low tissue specificity
Detected in all
UBA1
ENSSSCG00000012270
ENSG00000130985
Ubiquitin like modifier activating enzyme 1
Low tissue specificity
Detected in all
UBAC1
ENSSSCG00000033162
ENSG00000130560
UBA domain containing 1
Low tissue specificity
Detected in all
UBAC2
ENSSSCG00000009516
ENSG00000134882
UBA domain containing 2
Low tissue specificity
Detected in all
UBAP1
ENSSSCG00000021761
ENSG00000165006
Ubiquitin-associated protein 1
Low tissue specificity
Detected in all
UBE2D1
ENSSSCG00000033323
ENSG00000072401
Ubiquitin-conjugating enzyme E2 D1
Tissue enhanced
Detected in all
skeletal muscle:
89.5
UBE2D4
ENSSSCG00000016722
ENSG00000078967
Ubiquitin conjugating enzyme E2 D4 (putative)
Tissue enhanced
Detected in all
skeletal muscle:
119.7
UBE2G2
ENSSSCG00000027165
ENSG00000184787
Ubiquitin conjugating enzyme E2 G2
Low tissue specificity
Detected in all
UBE2R2
ENSSSCG00000034725
ENSG00000107341
Ubiquitin conjugating enzyme E2 R2
Low tissue specificity
Detected in all
UBL4A
ENSSSCG00000037387
ENSG00000102178
Ubiquitin like 4A
Low tissue specificity
Detected in all
UBL7
ENSSSCG00000001907
ENSG00000138629
Ubiquitin-like protein 7
Tissue enhanced
Detected in all
lens:
61.2
UBXN1
ENSSSCG00000023110
ENSG00000162191
UBX domain protein 1
Tissue enhanced
Detected in all
lens:
121.2
UBXN6
ENSSSCG00000013510
ENSG00000167671
UBX domain protein 6
Tissue enhanced
Detected in all
lens:
86.6
testis:
71.4
UGP2
ENSSSCG00000008368
ENSG00000169764
UTP--glucose-1-phosphate uridylyltransferase
Tissue enhanced
Detected in all
ovary:
97.5
UHRF1BP1
ENSSSCG00000001532
ENSG00000065060
UHRF1 binding protein 1
Low tissue specificity
Detected in all
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