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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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836 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RETREG1
ENSSSCG00000016792
ENSG00000154153
Reticulophagy regulator 1
Low tissue specificity
Detected in all
REX1BD
ENSSSCG00000040666
ENSG00000006015
Required for excision 1-B domain containing
Low tissue specificity
Detected in all
REXO2
ENSSSCG00000015056
ENSG00000076043
RNA exonuclease 2
Tissue enhanced
Detected in all
ovary:
85.5
RGCC
ENSSSCG00000009434
ENSG00000102760
Regulator of cell cycle RGCC
Low tissue specificity
Detected in all
RGP1
ENSSSCG00000005320
ENSG00000107185
RGP1 homolog, RAB6A GEF complex partner 1
Low tissue specificity
Detected in all
RHEB
ENSSSCG00000016434
ENSG00000106615
GTP-binding protein Rheb
Tissue enhanced
Detected in all
lens:
152.9
RIPK2
ENSSSCG00000024096
ENSG00000104312
Receptor interacting serine/threonine kinase 2
Low tissue specificity
Detected in all
RMND5A
ENSSSCG00000035478
ENSG00000153561
Required for meiotic nuclear division 5 homolog A
Low tissue specificity
Detected in all
RNASEH2C
ENSSSCG00000012979
ENSG00000172922
Ribonuclease H2 subunit C
Low tissue specificity
Detected in all
RNF103
ENSSSCG00000008218
ENSG00000239305
Ring finger protein 103
Low tissue specificity
Detected in all
RNF14
ENSSSCG00000014394
ENSG00000013561
Ring finger protein 14
Low tissue specificity
Detected in all
RNF181
ENSSSCG00000008232
ENSG00000168894
E3 ubiquitin-protein ligase RNF181
Tissue enhanced
Detected in all
lens:
77.3
RNF185
ENSSSCG00000010024
ENSG00000138942
Ring finger protein 185
Low tissue specificity
Detected in all
RNF26
ENSSSCG00000015117
ENSG00000173456
Ring finger protein 26
Low tissue specificity
Detected in all
ROMO1
ENSSSCG00000007308
ENSG00000125995
Reactive oxygen species modulator 1
Low tissue specificity
Detected in all
RORA
ENSSSCG00000004576
ENSG00000069667
RAR related orphan receptor A
Tissue enhanced
Detected in all
skin:
66.7
RPL11
ENSSSCG00000024260
ENSG00000142676
60S ribosomal protein L11
Tissue enhanced
Detected in all
lens:
391.3
RPL17-C18orf32
ENSSSCG00000035007
ENSG00000215472
60S ribosomal protein L17
Tissue enhanced
Detected in all
male glands:
245.9
RPL22
ENSSSCG00000040777
ENSG00000116251
60S ribosomal protein L22
Low tissue specificity
Detected in all
RPL27
ENSSSCG00000025507
ENSG00000131469
60S ribosomal protein L27
Low tissue specificity
Detected in all
RPL37A
ENSSSCG00000036716
ENSG00000197756
Ribosomal protein L37a
Tissue enhanced
Detected in all
male glands:
74.7
RPP21
ENSSSCG00000021130
ENSG00000241370
Ribonuclease P protein subunit p21
Low tissue specificity
Detected in all
RPP25L
ENSSSCG00000010973
ENSG00000164967
Ribonuclease P/MRP subunit p25 like
Low tissue specificity
Detected in all
RPS13
ENSSSCG00000013381
ENSG00000110700
40S ribosomal protein S13
Tissue enhanced
Detected in all
lens:
266.9
RPS16
ENSSSCG00000020817
ENSG00000105193
40S ribosomal protein S16
Low tissue specificity
Detected in all
RPS23
ENSSSCG00000014133
ENSG00000186468
40S ribosomal protein S23
Low tissue specificity
Detected in all
RPS26
ENSSSCG00000000374
40S ribosomal protein S26
Tissue enhanced
Detected in all
lens:
241.2
male glands:
277.8
RPS27A
ENSSSCG00000034617
ENSG00000143947
Ribosomal protein S27a
Tissue enhanced
Detected in all
male glands:
209.7
RPS28
ENSSSCG00000013597
ENSG00000233927
40S ribosomal protein S28
Low tissue specificity
Detected in all
RTN4IP1
ENSSSCG00000004373
ENSG00000130347
Reticulon 4 interacting protein 1
Low tissue specificity
Detected in all
RTRAF
ENSSSCG00000005029
ENSG00000087302
UPF0568 protein C14orf166 homolog
Low tissue specificity
Detected in all
S100A13
ENSSSCG00000038991
ENSG00000189171
S100 calcium binding protein A13
Tissue enriched
Detected in all
male glands:
118.5
SAMM50
ENSSSCG00000028346
ENSG00000100347
SAMM50 sorting and assembly machinery component
Low tissue specificity
Detected in all
SAP18
ENSSSCG00000028865
ENSG00000150459
Sin3A associated protein 18
Tissue enhanced
Detected in all
lens:
63.9
SAR1B
ENSSSCG00000014305
ENSG00000152700
GTP-binding protein SAR1b
Tissue enhanced
Detected in all
skeletal muscle:
49.6
SBDS
ENSSSCG00000007732
ENSG00000126524
Ribosome maturation protein SBDS
Tissue enhanced
Detected in all
lens:
115.3
SCAMP3
ENSSSCG00000006520
ENSG00000116521
Secretory carrier-associated membrane protein 3
Low tissue specificity
Detected in all
SCAMP4
ENSSSCG00000013446
ENSG00000227500
Secretory carrier membrane protein 4
Low tissue specificity
Detected in all
SCAND1
ENSSSCG00000007312
ENSG00000171222
SCAN domain containing 1
Low tissue specificity
Detected in all
SCNM1
ENSSSCG00000006632
ENSG00000163156
Sodium channel modifier 1
Tissue enhanced
Detected in all
skeletal muscle:
22.0
SDHA
ENSSSCG00000020686
ENSG00000073578
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
Tissue enhanced
Detected in all
skeletal muscle:
87.7
SDHAF2
ENSSSCG00000013082
ENSG00000167985
Succinate dehydrogenase complex assembly factor 2
Tissue enhanced
Detected in all
lens:
64.8
SDHB
ENSSSCG00000020926
ENSG00000117118
Succinate dehydrogenase
Tissue enhanced
Detected in all
skeletal muscle:
86.3
SDHD
ENSSSCG00000015034
Succinate dehydrogenase
Low tissue specificity
Detected in all
SETD7
ENSSSCG00000030396
ENSG00000145391
SET domain containing lysine methyltransferase 7
Low tissue specificity
Detected in all
SGTA
ENSSSCG00000013467
ENSG00000104969
Small glutamine-rich tetratricopeptide repeat-containing protein alpha
Low tissue specificity
Detected in all
SH3BP5L
ENSSSCG00000025900
ENSG00000175137
SH3 binding domain protein 5 like
Low tissue specificity
Detected in all
SIAH1
ENSSSCG00000037263
ENSG00000196470
Siah E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
SIRT3
ENSSSCG00000014558
ENSG00000142082
NAD-dependent protein deacetylase sirtuin-3, mitochondrial precursor
Low tissue specificity
Detected in all
SIRT5
ENSSSCG00000031129
ENSG00000124523
NAD-dependent protein deacylase sirtuin-5, mitochondrial
Low tissue specificity
Detected in all
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