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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other congenital disorders
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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836 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NUDC
ENSSSCG00000003566
ENSG00000090273
Nuclear migration protein nudC
Low tissue specificity
Detected in all
NUDT18
ENSSSCG00000009615
ENSG00000275074
Nudix hydrolase 18
Low tissue specificity
Detected in all
NUDT22
ENSSSCG00000013039
ENSG00000149761
Nudix hydrolase 22
Low tissue specificity
Detected in all
NUDT7
ENSSSCG00000002697
ENSG00000140876
Nudix hydrolase 7
Tissue enhanced
Detected in all
choroid plexus:
45.4
NUDT8
ENSSSCG00000035645
ENSG00000167799
Nudix hydrolase 8
Low tissue specificity
Detected in all
NUDT9
ENSSSCG00000009223
ENSG00000170502
Nudix hydrolase 9
Low tissue specificity
Detected in all
OAZ1
ENSSSCG00000013460
ENSG00000104904
Sus scrofa ornithine decarboxylase antizyme 1 (OAZ1), transcript variant 1, mRNA.
Low tissue specificity
Detected in all
OPA3
ENSSSCG00000037100
ENSG00000125741
OPA3, outer mitochondrial membrane lipid metabolism regulator
Low tissue specificity
Detected in all
OXA1L
ENSSSCG00000002042
ENSG00000155463
OXA1L, mitochondrial inner membrane protein
Low tissue specificity
Detected in all
OXSM
ENSSSCG00000011215
ENSG00000151093
3-oxoacyl-ACP synthase, mitochondrial
Low tissue specificity
Detected in all
P2RX7
ENSSSCG00000009817
ENSG00000089041
Purinergic receptor P2X 7
Low tissue specificity
Detected in all
P4HA1
ENSSSCG00000010292
ENSG00000122884
Prolyl 4-hydroxylase subunit alpha-1 precursor
Tissue enhanced
Detected in all
lens:
52.4
PABPC4L
ENSSSCG00000009067
ENSG00000254535
Poly(A) binding protein cytoplasmic 4 like
Low tissue specificity
Detected in many
PACSIN3
ENSSSCG00000013244
ENSG00000165912
Protein kinase C and casein kinase substrate in neurons 3
Tissue enhanced
Detected in many
lens:
79.7
skeletal muscle:
53.7
PAICS
ENSSSCG00000008901
ENSG00000128050
Phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase
Tissue enhanced
Detected in all
liver:
46.8
PANK1
ENSSSCG00000010456
ENSG00000152782
Pantothenate kinase 1
Tissue enhanced
Detected in all
liver:
40.5
male glands:
36.0
PARK7
ENSSSCG00000003385
ENSG00000116288
Protein DJ-1
Tissue enriched
Detected in all
lens:
158.3
PAXX
ENSSSCG00000038428
ENSG00000148362
PAXX, non-homologous end joining factor
Low tissue specificity
Detected in all
PCBD1
ENSSSCG00000010275
ENSG00000166228
Pterin-4-alpha-carbinolamine dehydratase
Tissue enhanced
Detected in all
liver:
105.1
PCBP1
ENSSSCG00000027224
ENSG00000169564
Poly(rC) binding protein 1
Low tissue specificity
Detected in all
PCCA
ENSSSCG00000009522
ENSG00000175198
Propionyl-CoA carboxylase alpha subunit
Tissue enhanced
Detected in all
liver:
61.5
PCCB
ENSSSCG00000011653
ENSG00000114054
Propionyl-CoA carboxylase beta chain, mitochondrial
Low tissue specificity
Detected in all
PCID2
ENSSSCG00000009557
ENSG00000126226
PCI domain containing 2
Low tissue specificity
Detected in all
PCMTD1
ENSSSCG00000006267
ENSG00000168300
Protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
Low tissue specificity
Detected in all
PCYOX1
ENSSSCG00000029790
ENSG00000116005
Prenylcysteine oxidase 1
Low tissue specificity
Detected in all
PCYT1A
ENSSSCG00000011845
ENSG00000161217
Phosphate cytidylyltransferase 1, choline, alpha
Low tissue specificity
Detected in all
PDAP1
ENSSSCG00000033450
ENSG00000106244
PDGFA associated protein 1
Low tissue specificity
Detected in all
PDHB
ENSSSCG00000025881
ENSG00000168291
Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
Low tissue specificity
Detected in all
PDHX
ENSSSCG00000013298
ENSG00000110435
Pyruvate dehydrogenase complex component X
Low tissue specificity
Detected in all
PDLIM5
ENSSSCG00000009192
ENSG00000163110
PDZ and LIM domain 5
Tissue enhanced
Detected in all
heart:
132.1
skeletal muscle:
126.5
PDRG1
ENSSSCG00000007237
ENSG00000088356
P53 and DNA damage regulated 1
Low tissue specificity
Detected in all
PECR
ENSSSCG00000022758
ENSG00000115425
Peroxisomal trans-2-enoyl-CoA reductase
Tissue enhanced
Detected in all
kidney:
66.4
PEF1
ENSSSCG00000034810
ENSG00000162517
Penta-EF-hand domain containing 1
Low tissue specificity
Detected in all
PET100
ENSSSCG00000034876
ENSG00000229833
Protein PET100 homolog, mitochondrial
Tissue enhanced
Detected in all
male glands:
47.1
PEX14
ENSSSCG00000003405
ENSG00000142655
Peroxisomal biogenesis factor 14
Low tissue specificity
Detected in all
PGK1
ENSSSCG00000012440
ENSG00000102144
Phosphoglycerate kinase 1
Tissue enhanced
Detected in all
skeletal muscle:
116.8
PGLS
ENSSSCG00000013878
ENSG00000130313
6-phosphogluconolactonase
Low tissue specificity
Detected in all
PGP
ENSSSCG00000036614
ENSG00000184207
Phosphoglycolate phosphatase
Tissue enhanced
Detected in all
skeletal muscle:
43.4
testis:
47.1
PGRMC2
ENSSSCG00000009072
Membrane-associated progesterone receptor component 2
Low tissue specificity
Detected in all
PHB
ENSSSCG00000017549
ENSG00000167085
Prohibitin
Low tissue specificity
Detected in all
PIGC
ENSSSCG00000015486
ENSG00000135845
Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
Low tissue specificity
Detected in all
PIGY
ENSSSCG00000009211
ENSG00000145337
Protein preY, mitochondrial
Low tissue specificity
Detected in all
PKM
ENSSSCG00000001930
ENSG00000067225
Pyruvate kinase M1/2
Tissue enhanced
Detected in all
skeletal muscle:
301.5
PLA2G12A
ENSSSCG00000009139
ENSG00000123739
Phospholipase A2 group XIIA
Low tissue specificity
Detected in all
PLA2G16
ENSSSCG00000026914
ENSG00000176485
HRAS-like suppressor 3
Tissue enhanced
Detected in all
lens:
127.2
PLBD2
ENSSSCG00000009872
ENSG00000151176
Phospholipase B domain containing 2
Tissue enhanced
Detected in all
ovary:
78.8
PLGRKT
ENSSSCG00000005212
ENSG00000107020
Plasminogen receptor (KT)
Low tissue specificity
Detected in all
PLIN5
ENSSSCG00000013513
ENSG00000214456
Perilipin-5
Tissue enhanced
Detected in many
choroid plexus:
52.8
liver:
14.5
skeletal muscle:
14.9
PMPCB
ENSSSCG00000015422
ENSG00000105819
Peptidase, mitochondrial processing beta subunit
Low tissue specificity
Detected in all
PMVK
ENSSSCG00000006535
ENSG00000163344
Phosphomevalonate kinase
Tissue enhanced
Detected in all
liver:
33.5
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