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Gene name
Human disease related genes
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External id
Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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836 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000027840
ENSG00000105669
Low tissue specificity
Detected in all
na
ENSSSCG00000027907
ENSG00000172270
Basigin precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000028414
Low tissue specificity
Detected in all
na
ENSSSCG00000029261
Low tissue specificity
Detected in all
na
ENSSSCG00000029474
ENSG00000169857
Tissue enhanced
Detected in all
testis:
71.6
na
ENSSSCG00000029630
Tissue enhanced
Detected in all
lens:
83.7
na
ENSSSCG00000030318
ENSG00000143252
Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
Low tissue specificity
Detected in all
na
ENSSSCG00000030578
ENSG00000137547
39S ribosomal protein L15, mitochondrial
Tissue enhanced
Detected in all
testis:
37.1
na
ENSSSCG00000030849
Tissue enhanced
Detected in all
male glands:
170.4
na
ENSSSCG00000030912
Tissue enhanced
Detected in many
heart:
58.8
pineal gland:
35.7
skeletal muscle:
64.4
na
ENSSSCG00000031073
ENSG00000105393
Low tissue specificity
Detected in all
na
ENSSSCG00000031838
Tissue enhanced
Detected in all
male glands:
224.0
na
ENSSSCG00000031913
Low tissue specificity
Detected in all
na
ENSSSCG00000032073
ENSG00000128185,ENSG00000278817
Low tissue specificity
Detected in all
na
ENSSSCG00000032129
Low tissue specificity
Detected in all
na
ENSSSCG00000032165
Tissue enhanced
Detected in all
lens:
85.4
na
ENSSSCG00000032166
ENSG00000167863
ATP synthase subunit d, mitochondrial
Tissue enhanced
Detected in all
skeletal muscle:
80.8
na
ENSSSCG00000032469
ENSG00000161956
Low tissue specificity
Detected in all
na
ENSSSCG00000032501
Low tissue specificity
Detected in all
na
ENSSSCG00000032556
ENSG00000149925,ENSG00000285043
Group enriched
Detected in all
lens:
1739.5
skeletal muscle:
509.9
na
ENSSSCG00000033019
Low tissue specificity
Detected in all
na
ENSSSCG00000033068
ENSG00000177700
Low tissue specificity
Detected in all
na
ENSSSCG00000033272
ENSG00000105993
Low tissue specificity
Detected in all
na
ENSSSCG00000033310
Tissue enhanced
Detected in all
lens:
296.0
male glands:
331.4
na
ENSSSCG00000033730
Tissue enhanced
Detected in many
lens:
20.1
na
ENSSSCG00000033744
ENSG00000169627,ENSG00000183336
Tissue enhanced
Detected in all
male glands:
70.3
na
ENSSSCG00000033827
Tissue enhanced
Detected in all
lens:
113.8
na
ENSSSCG00000033994
Tissue enhanced
Detected in many
heart:
19.4
skeletal muscle:
21.5
na
ENSSSCG00000034019
ENSG00000241468
ATP synthase subunit f, mitochondrial
Low tissue specificity
Detected in all
na
ENSSSCG00000034129
ENSG00000243147
Tissue enhanced
Detected in all
lens:
49.6
na
ENSSSCG00000034190
ENSG00000278224
Low tissue specificity
Detected in all
na
ENSSSCG00000034647
ENSG00000116898
Low tissue specificity
Detected in all
na
ENSSSCG00000034927
ENSG00000184110,ENSG00000205609
Low tissue specificity
Detected in all
na
ENSSSCG00000035048
Low tissue specificity
Detected in all
na
ENSSSCG00000035080
Low tissue specificity
Detected in all
na
ENSSSCG00000035538
ENSG00000156467
Ubiquinol-cytochrome c reductase binding protein
Tissue enhanced
Detected in all
skeletal muscle:
47.1
na
ENSSSCG00000035561
ENSG00000132207,ENSG00000181625
Low tissue specificity
Detected in all
na
ENSSSCG00000035666
ENSG00000101220
Tissue enhanced
Detected in all
testis:
79.2
na
ENSSSCG00000035686
Citrate synthase, mitochondrial precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000035728
ENSG00000141552
Low tissue specificity
Detected in all
na
ENSSSCG00000035811
60S ribosomal protein L32
Low tissue specificity
Detected in all
na
ENSSSCG00000037030
60S ribosomal protein L15
Low tissue specificity
Detected in all
na
ENSSSCG00000037201
ENSG00000115204
Low tissue specificity
Detected in all
na
ENSSSCG00000037251
Low tissue specificity
Detected in all
na
ENSSSCG00000037463
ENSG00000134056
Tissue enhanced
Detected in all
endometrium:
43.3
na
ENSSSCG00000037971
ENSG00000183891
Tissue enhanced
Detected in all
adrenal gland:
25.2
na
ENSSSCG00000038364
ENSG00000214026,ENSG00000276345
Low tissue specificity
Detected in all
na
ENSSSCG00000038399
ENSG00000154723
Low tissue specificity
Detected in all
na
ENSSSCG00000038657
ENSG00000123472
Low tissue specificity
Detected in all
na
ENSSSCG00000038859
ENSG00000153391
Low tissue specificity
Detected in all
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