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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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499 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SERTAD4
ENSSSCG00000026404
ENSG00000082497
SERTA domain containing 4
Tissue enhanced
Detected in many
smooth muscle:
37.5
SESN1
ENSSSCG00000004390
ENSG00000080546
Sestrin 1
Tissue enhanced
Detected in all
skeletal muscle:
58.7
SFRP2
ENSSSCG00000009004
ENSG00000145423
Secreted frizzled-related protein 2 precursor
Tissue enhanced
Detected in many
dura mater:
179.5
retina:
111.4
SFXN3
ENSSSCG00000022005
ENSG00000107819
Sideroflexin 3
Low tissue specificity
Detected in all
SFXN4
ENSSSCG00000010681
ENSG00000183605
Sideroflexin 4
Low tissue specificity
Detected in all
SGCB
ENSSSCG00000008833
ENSG00000163069
Beta-sarcoglycan
Low tissue specificity
Detected in all
SGCE
ENSSSCG00000015328
ENSG00000127990
Epsilon-sarcoglycan
Low tissue specificity
Detected in all
SGK2
ENSSSCG00000024325
ENSG00000101049
SGK2, serine/threonine kinase 2
Tissue enhanced
Detected in many
adipose tissue:
85.4
brain:
31.5
kidney:
33.0
SH3BGR
ENSSSCG00000029219
ENSG00000185437
SH3 domain-binding glutamic acid-rich protein
Tissue enhanced
Detected in many
heart:
42.7
skeletal muscle:
85.0
smooth muscle:
46.7
SH3BP5
ENSSSCG00000024938
ENSG00000131370
SH3 domain binding protein 5
Low tissue specificity
Detected in all
SLC12A4
ENSSSCG00000028609
ENSG00000124067
Solute carrier family 12 member 4
Tissue enhanced
Detected in all
choroid plexus:
54.7
SLC20A2
ENSSSCG00000007027
ENSG00000168575
Solute carrier family 20 member 2
Tissue enhanced
Detected in all
choroid plexus:
50.7
SLC25A11
ENSSSCG00000032472
ENSG00000108528
Solute carrier family 25 member 11
Tissue enhanced
Detected in many
skeletal muscle:
37.3
SLC25A12
ENSSSCG00000015949
ENSG00000115840
Solute carrier family 25 member 12
Tissue enhanced
Detected in all
skeletal muscle:
57.1
SLC25A13
ENSSSCG00000015336
ENSG00000004864
Solute carrier family 25 member 13
Low tissue specificity
Detected in all
SLC25A4
ENSSSCG00000015790
ENSG00000151729
Solute carrier family 25 member 4
Group enriched
Detected in all
heart:
222.5
skeletal muscle:
196.1
SLC38A3
ENSSSCG00000011397
ENSG00000188338
Solute carrier family 38 member 3
Group enriched
Detected in many
choroid plexus:
43.4
liver:
136.6
retina:
56.5
SLC41A3
ENSSSCG00000001825
ENSG00000114544
Solute carrier family 41 member 3
Low tissue specificity
Detected in all
SLC7A2
ENSSSCG00000006987
ENSG00000003989
Cationic amino acid transporter 2
Tissue enriched
Detected in many
liver:
87.6
SLC9B2
ENSSSCG00000028101
ENSG00000164038
Solute carrier family 9 member B2
Tissue enhanced
Detected in many
dura mater:
29.9
heart:
30.6
SLIT2
ENSSSCG00000008749
ENSG00000145147
Slit guidance ligand 2
Low tissue specificity
Detected in many
SMAD5
ENSSSCG00000014319
ENSG00000113658
SMAD family member 5
Low tissue specificity
Detected in all
SNCAIP
ENSSSCG00000014235
ENSG00000064692
Synphilin-1 isoform 1a
Low tissue specificity
Detected in many
SNCG
ENSSSCG00000026850
ENSG00000173267
Gamma-synuclein
Tissue enriched
Detected in many
lens:
267.5
SOCS5
ENSSSCG00000008437
ENSG00000171150
Suppressor of cytokine signaling 5
Low tissue specificity
Detected in all
SOX6
ENSSSCG00000034191
ENSG00000110693
SRY-box 6
Tissue enhanced
Detected in many
cartilage:
71.4
SP7
ENSSSCG00000034328
ENSG00000170374
Sp7 transcription factor
Group enriched
Detected in many
bone marrow:
15.2
brain:
11.4
cartilage:
23.7
dura mater:
28.3
SPARC
ENSSSCG00000017082
ENSG00000113140
SPARC precursor
Tissue enhanced
Detected in all
cartilage:
551.7
SPATS2L
ENSSSCG00000016090
ENSG00000196141
SPATS2-like protein
Tissue enhanced
Detected in all
thyroid gland:
99.1
SPON1
ENSSSCG00000013393
ENSG00000262655
Spondin 1
Tissue enhanced
Detected in all
ovary:
52.6
SPTB
ENSSSCG00000002277
ENSG00000070182
Spectrin beta, erythrocytic
Tissue enhanced
Detected in many
heart:
28.4
pineal gland:
64.4
skeletal muscle:
43.1
SPTBN1
ENSSSCG00000040786
ENSG00000115306
Spectrin beta, non-erythrocytic 1
Low tissue specificity
Detected in all
SQLE
ENSSSCG00000005970
ENSG00000104549
Squalene monooxygenase
Low tissue specificity
Detected in all
ST3GAL3
ENSSSCG00000034059
ENSG00000126091
CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase
Tissue enhanced
Detected in all
lens:
38.4
ST3GAL6
ENSSSCG00000034493
ENSG00000064225
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Low tissue specificity
Detected in all
STARD4
ENSSSCG00000031518
ENSG00000164211
StAR-related lipid transfer protein 4
Tissue enhanced
Detected in many
liver:
30.0
ovary:
25.0
STK32B
ENSSSCG00000035020
ENSG00000152953
Serine/threonine kinase 32B
Tissue enhanced
Detected in many
cartilage:
11.3
gallbladder:
15.6
kidney:
14.4
smooth muscle:
13.1
STX2
ENSSSCG00000009747
ENSG00000111450
Syntaxin 2
Low tissue specificity
Detected in all
STXBP3
ENSSSCG00000006845
ENSG00000116266
Syntaxin binding protein 3
Low tissue specificity
Detected in all
SUGCT
ENSSSCG00000035581
ENSG00000175600
Succinyl-CoA:glutarate-CoA transferase
Low tissue specificity
Detected in all
SYNC
ENSSSCG00000021232
ENSG00000162520
Syncoilin, intermediate filament protein
Tissue enhanced
Detected in many
cervix:
44.4
SYNPO2L
ENSSSCG00000010303
ENSG00000166317
Synaptopodin 2 like
Group enriched
Detected in some
brain:
30.3
heart:
79.2
skeletal muscle:
64.8
TBC1D12
ENSSSCG00000010485
ENSG00000108239
TBC1 domain family member 12
Low tissue specificity
Detected in all
TBKBP1
ENSSSCG00000017515
ENSG00000198933
TBK1 binding protein 1
Low tissue specificity
Detected in all
TBX18
ENSSSCG00000004290
ENSG00000112837
T-box 18
Tissue enriched
Detected in many
cartilage:
52.6
TCEAL1
ENSSSCG00000012532
ENSG00000172465
Transcription elongation factor A like 1
Low tissue specificity
Detected in all
TCF4
ENSSSCG00000004535
ENSG00000196628
Transcription factor 4
Tissue enhanced
Detected in all
cartilage:
122.8
TGFA
ENSSSCG00000008326
ENSG00000163235
Protransforming growth factor alpha precursor
Group enriched
Detected in all
cartilage:
102.5
ovary:
30.9
TGFB2
ENSSSCG00000010816
ENSG00000092969
Transforming growth factor beta 2
Tissue enhanced
Detected in all
choroid plexus:
100.6
THRB
ENSSSCG00000036033
ENSG00000151090
Thyroid hormone receptor beta
Low tissue specificity
Detected in many
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