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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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499 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PLPP7
ENSSSCG00000005713
ENSG00000160539
Phospholipid phosphatase 7 (inactive)
Tissue enhanced
Detected in many
skeletal muscle:
58.0
PLS3
ENSSSCG00000012597
ENSG00000102024
Plastin 3
Low tissue specificity
Detected in all
PMEPA1
ENSSSCG00000034259
ENSG00000124225
Protein TMEPAI
Tissue enhanced
Detected in many
cartilage:
70.3
PMP22
ENSSSCG00000037832
ENSG00000109099
Peripheral myelin protein 22
Tissue enhanced
Detected in many
brain:
106.6
vagus nerve:
291.1
PON1
ENSSSCG00000015332
ENSG00000005421
Serum paraoxonase/arylesterase 1 precursor
Group enriched
Detected in some
kidney:
41.1
liver:
90.4
PPM1J
ENSSSCG00000006774
ENSG00000155367
Protein phosphatase, Mg2+/Mn2+ dependent 1J
Tissue enhanced
Detected in all
skeletal muscle:
37.6
PPP1R14C
ENSSSCG00000004094
ENSG00000198729
Protein phosphatase 1 regulatory inhibitor subunit 14C
Tissue enhanced
Detected in many
cornea:
21.4
heart:
30.0
skeletal muscle:
31.0
PPP1R3C
ENSSSCG00000010464
ENSG00000119938
Protein phosphatase 1 regulatory subunit 3C
Tissue enhanced
Detected in many
cartilage:
76.4
cornea:
52.4
heart:
76.5
PQLC1
ENSSSCG00000023171
ENSG00000122490
PQ loop repeat containing 1
Low tissue specificity
Detected in all
PRDM5
ENSSSCG00000009101
ENSG00000138738
PR/SET domain 5
Low tissue specificity
Detected in all
PRIMA1
ENSSSCG00000002464
ENSG00000175785
Proline rich membrane anchor 1
Tissue enhanced
Detected in many
brain:
34.8
mesothelial tissue:
28.9
PRKAA2
ENSSSCG00000036145
ENSG00000162409
5'-AMP-activated protein kinase catalytic subunit alpha-2
Tissue enhanced
Detected in many
heart:
38.4
skeletal muscle:
54.3
PRKD1
ENSSSCG00000001975
ENSG00000184304
Protein kinase D1
Low tissue specificity
Detected in all
PRKG1
ENSSSCG00000010429
ENSG00000185532
CGMP-dependent protein kinase 1
Tissue enhanced
Detected in all
smooth muscle:
48.6
PRKN
ENSSSCG00000004032
ENSG00000185345
E3 ubiquitin-protein ligase parkin
Low tissue specificity
Detected in all
PRPF31
ENSSSCG00000003263
ENSG00000105618
Pre-mRNA processing factor 31
Low tissue specificity
Detected in all
PRRG1
ENSSSCG00000027777
ENSG00000130962
Proline rich and Gla domain 1
Tissue enhanced
Detected in all
brain:
47.4
vagus nerve:
33.3
PTGFR
ENSSSCG00000039548
ENSG00000122420
Prostaglandin F2-alpha receptor
Tissue enhanced
Detected in many
bone marrow:
26.3
dura mater:
25.4
ovary:
81.5
PTPA
ENSSSCG00000005672
ENSG00000119383
Protein phosphatase 2 phosphatase activator
Low tissue specificity
Detected in all
PTPRG
ENSSSCG00000011485
ENSG00000144724
Protein tyrosine phosphatase, receptor type G
Low tissue specificity
Detected in all
PYGM
ENSSSCG00000013022
ENSG00000068976
Glycogen phosphorylase, muscle associated
Tissue enriched
Detected in many
skeletal muscle:
418.1
RAB11FIP5
ENSSSCG00000022162
ENSG00000135631
RAB11 family interacting protein 5
Tissue enhanced
Detected in all
kidney:
42.9
testis:
41.1
RAB12
ENSSSCG00000038026
ENSG00000206418
RAB12, member RAS oncogene family
Low tissue specificity
Detected in all
RAB23
ENSSSCG00000029539
ENSG00000112210
RAB23, member RAS oncogene family
Tissue enhanced
Detected in all
smooth muscle:
49.7
RAB30
ENSSSCG00000014900
ENSG00000137502
RAB30, member RAS oncogene family
Low tissue specificity
Detected in all
RAB7B
ENSSSCG00000036352
ENSG00000276600
RAB7B, member RAS oncogene family
Tissue enhanced
Detected in all
brain:
36.6
RAI2
ENSSSCG00000012153
ENSG00000131831
Retinoic acid induced 2
Tissue enhanced
Detected in many
cervix:
33.3
fallopian tube:
29.7
heart:
25.9
RALB
ENSSSCG00000025455
ENSG00000144118
RAS like proto-oncogene B
Low tissue specificity
Detected in all
RBP1
ENSSSCG00000011664
ENSG00000114115
Retinol-binding protein 1
Tissue enhanced
Detected in many
choroid plexus:
50.2
cornea:
58.8
RCAN1
ENSSSCG00000012050
ENSG00000159200
Calcipressin-1
Tissue enhanced
Detected in all
cartilage:
90.9
RDH11
ENSSSCG00000002296
ENSG00000072042
Retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
Tissue enhanced
Detected in all
adrenal gland:
57.8
ovary:
62.2
testis:
122.1
REEP3
ENSSSCG00000036476
ENSG00000165476
Receptor accessory protein 3
Tissue enhanced
Detected in all
brain:
69.5
RFLNB
ENSSSCG00000038618
ENSG00000183688
Refilin B
Low tissue specificity
Detected in many
RGL1
ENSSSCG00000015563
ENSG00000143344
Ral guanine nucleotide dissociation stimulator like 1
Low tissue specificity
Detected in all
RGS5
ENSSSCG00000037821
ENSG00000143248
Regulator of G-protein signaling 5
Tissue enhanced
Detected in many
cartilage:
142.1
RHBDD3
ENSSSCG00000009973
ENSG00000100263
Rhomboid domain containing 3
Tissue enhanced
Detected in all
lens:
46.0
testis:
38.8
RHOQ
ENSSSCG00000031261
ENSG00000119729
Ras homolog family member Q
Low tissue specificity
Detected in all
RHOT1
ENSSSCG00000017735
ENSG00000126858
Ras homolog family member T1
Tissue enhanced
Detected in all
heart:
61.8
retina:
61.4
RILPL1
ENSSSCG00000009773
ENSG00000188026
Rab interacting lysosomal protein like 1
Tissue enhanced
Detected in all
heart:
50.6
RNF11
ENSSSCG00000031172
ENSG00000123091
Ring finger protein 11
Low tissue specificity
Detected in all
RNF144A
ENSSSCG00000008646
ENSG00000151692
Ring finger protein 144A
Tissue enhanced
Detected in all
adrenal gland:
79.0
RUNX1T1
ENSSSCG00000006115
ENSG00000079102
RUNX1 translocation partner 1
Low tissue specificity
Detected in all
RUSC2
ENSSSCG00000005308
ENSG00000198853
RUN and SH3 domain containing 2
Low tissue specificity
Detected in all
SASH1
ENSSSCG00000033175
ENSG00000111961
SAM and SH3 domain containing 1
Low tissue specificity
Detected in all
SAT2
ENSSSCG00000017952
ENSG00000141504
Diamine acetyltransferase 2
Low tissue specificity
Detected in all
SCARA3
ENSSSCG00000020846
ENSG00000168077
Scavenger receptor class A member 3
Tissue enhanced
Detected in many
cartilage:
133.2
penis:
53.5
SCD
ENSSSCG00000010554
ENSG00000099194
Acyl-CoA desaturase
Tissue enhanced
Detected in many
adipose tissue:
174.7
aorta:
147.9
bone marrow:
192.1
SELENBP1
ENSSSCG00000006624
ENSG00000143416
Selenium binding protein 1
Tissue enhanced
Detected in all
large intestine:
122.7
skin:
83.9
SEMA3A
ENSSSCG00000015398
ENSG00000075213
Semaphorin 3A
Tissue enriched
Detected in many
cartilage:
141.5
SEMA6A
ENSSSCG00000014224
ENSG00000092421
Semaphorin 6A
Low tissue specificity
Detected in many
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