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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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499 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TIMP2
ENSSSCG00000017164
ENSG00000035862
Metalloproteinase inhibitor 2 precursor
Low tissue specificity
Detected in all
TIMP4
ENSSSCG00000033000
ENSG00000157150
TIMP metallopeptidase inhibitor 4
Group enriched
Detected in many
adipose tissue:
32.1
brain:
42.7
TMED1
ENSSSCG00000038623
ENSG00000099203
Transmembrane p24 trafficking protein 1
Low tissue specificity
Detected in all
TMEM185A
ENSSSCG00000012739
ENSG00000269556
Transmembrane protein 185A
Low tissue specificity
Detected in all
TMEM266
ENSSSCG00000001863
ENSG00000169758
Transmembrane protein 266
Tissue enhanced
Detected in many
brain:
37.6
TMEM38A
ENSSSCG00000013864
ENSG00000072954
Transmembrane protein 38A
Tissue enriched
Detected in many
skeletal muscle:
129.5
TMEM47
ENSSSCG00000024132
ENSG00000147027
Transmembrane protein 47
Tissue enhanced
Detected in all
brain:
37.2
lens:
37.9
TMEM52
ENSSSCG00000028530
ENSG00000178821
Transmembrane protein 52
Tissue enhanced
Detected in many
skeletal muscle:
98.9
TMEM65
ENSSSCG00000040731
ENSG00000164983
Transmembrane protein 65
Low tissue specificity
Detected in all
TMEM98
ENSSSCG00000017727
ENSG00000006042
Transmembrane protein 98
Tissue enhanced
Detected in all
mesothelial tissue:
54.6
TMOD1
ENSSSCG00000023010
ENSG00000136842
Tropomodulin 1
Tissue enhanced
Detected in many
cervix:
45.0
lens:
104.7
skeletal muscle:
54.1
TOLLIP
ENSSSCG00000033033
ENSG00000078902
Toll-interacting protein
Low tissue specificity
Detected in all
TOMM40L
ENSSSCG00000006354
ENSG00000158882
Translocase of outer mitochondrial membrane 40 like
Low tissue specificity
Detected in all
TOR3A
ENSSSCG00000015525
ENSG00000186283
Torsin family 3 member A
Low tissue specificity
Detected in all
TPGS1
ENSSSCG00000036434
ENSG00000141933
Tubulin polyglutamylase complex subunit 1
Low tissue specificity
Detected in all
TRIM8
ENSSSCG00000038856
ENSG00000171206
Tripartite motif containing 8
Low tissue specificity
Detected in all
TSC22D3
ENSSSCG00000030241
ENSG00000157514
TSC22 domain family protein 3
Low tissue specificity
Detected in all
TSPAN15
ENSSSCG00000036152
ENSG00000099282
Tetraspanin 15
Tissue enhanced
Detected in many
lens:
89.8
TSPAN2
ENSSSCG00000006748
ENSG00000134198
Tetraspanin 2
Tissue enhanced
Detected in many
cervix:
42.1
smooth muscle:
36.8
TTC36
ENSSSCG00000038839
ENSG00000172425
Tetratricopeptide repeat domain 36
Tissue enhanced
Detected in many
breast:
18.7
liver:
18.4
UBIAD1
ENSSSCG00000037325
ENSG00000120942
UbiA prenyltransferase domain containing 1
Low tissue specificity
Detected in all
UCN
ENSSSCG00000039206
ENSG00000163794
Urocortin
Tissue enhanced
Detected in many
brain:
5.8
UGGT2
ENSSSCG00000009502
ENSG00000102595
UDP-glucose glycoprotein glucosyltransferase 2
Low tissue specificity
Detected in many
USP13
ENSSSCG00000011765
ENSG00000058056
Ubiquitin specific peptidase 13
Group enriched
Detected in many
heart:
60.7
skeletal muscle:
68.4
USP2
ENSSSCG00000015120
ENSG00000036672
Ubiquitin specific peptidase 2
Tissue enhanced
Detected in many
skeletal muscle:
56.0
testis:
58.7
USP30
ENSSSCG00000032917
ENSG00000135093
Ubiquitin specific peptidase 30
Low tissue specificity
Detected in all
USP53
ENSSSCG00000023174
ENSG00000145390
Ubiquitin specific peptidase 53
Low tissue specificity
Detected in all
VAMP3
ENSSSCG00000035376
ENSG00000049245
Vesicle associated membrane protein 3
Low tissue specificity
Detected in all
VIT
ENSSSCG00000008501
ENSG00000205221
Vitrin
Group enriched
Detected in many
cartilage:
112.4
lens:
52.1
VLDLR
ENSSSCG00000005229
ENSG00000147852
Very low-density lipoprotein receptor precursor
Tissue enhanced
Detected in all
ovary:
56.7
VWA1
ENSSSCG00000003344
ENSG00000179403
Von Willebrand factor A domain containing 1
Tissue enhanced
Detected in many
vagus nerve:
105.0
WBP2
ENSSSCG00000021672
ENSG00000132471
WW domain binding protein 2
Low tissue specificity
Detected in all
WDR45
ENSSSCG00000012290
ENSG00000196998
WD repeat domain phosphoinositide-interacting protein 4
Low tissue specificity
Detected in all
WLS
ENSSSCG00000003795
ENSG00000116729
Wntless Wnt ligand secretion mediator
Tissue enhanced
Detected in many
choroid plexus:
66.6
lens:
73.9
pineal gland:
103.5
WNT9A
ENSSSCG00000024671
ENSG00000143816
Wnt family member 9A
Low tissue specificity
Detected in many
YPEL2
ENSSSCG00000035400
ENSG00000175155
Yippee like 2
Tissue enhanced
Detected in all
lens:
54.0
ZBTB47
ENSSSCG00000030065
ENSG00000114853
Zinc finger and BTB domain containing 47
Low tissue specificity
Detected in all
ZC3H12C
ENSSSCG00000015014
ENSG00000149289
Zinc finger CCCH-type containing 12C
Low tissue specificity
Detected in all
ZCCHC24
ENSSSCG00000033074
ENSG00000165424
Zinc finger CCHC-type containing 24
Low tissue specificity
Detected in all
ZDHHC20
ENSSSCG00000026744
ENSG00000180776
Zinc finger DHHC-type containing 20
Low tissue specificity
Detected in all
ZFAND5
ENSSSCG00000030268
ENSG00000107372
AN1-type zinc finger protein 5
Tissue enhanced
Detected in all
skeletal muscle:
113.3
ZFHX4
ENSSSCG00000006169
ENSG00000091656
Zinc finger homeobox 4
Low tissue specificity
Detected in many
ZFPM2
ENSSSCG00000006038
ENSG00000169946
Zinc finger protein ZFPM2
Tissue enhanced
Detected in many
brain:
34.8
mesothelial tissue:
30.7
ZNF423
ENSSSCG00000002838
ENSG00000102935
Zinc finger protein 423
Low tissue specificity
Detected in all
ZNF514
ENSSSCG00000031072
ENSG00000144026
Zinc finger protein 514
Low tissue specificity
Detected in all
ZNF532
ENSSSCG00000034704
ENSG00000074657
Zinc finger protein 532
Low tissue specificity
Detected in all
ZNF641
ENSSSCG00000021654
ENSG00000167528
Zinc finger protein 641
Low tissue specificity
Detected in all
ZSWIM6
ENSSSCG00000025194
ENSG00000130449
Zinc finger SWIM-type containing 6
Low tissue specificity
Detected in all
ZYG11B
ENSSSCG00000003857
ENSG00000162378
Zyg-11 family member B, cell cycle regulator
Tissue enhanced
Detected in all
skeletal muscle:
67.6
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