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Keyword
Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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499 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NFIX
ENSSSCG00000013742
ENSG00000008441
Nuclear factor I X
Low tissue specificity
Detected in all
NGRN
ENSSSCG00000031810
ENSG00000182768
Neugrin, neurite outgrowth associated
Tissue enhanced
Detected in all
testis:
32.5
NHSL2
ENSSSCG00000012408
ENSG00000204131
NHS like 2
Low tissue specificity
Detected in many
NIPAL4
ENSSSCG00000017053
ENSG00000172548
NIPA like domain containing 4
Tissue enhanced
Detected in many
brain:
16.9
skin:
29.1
NKD1
ENSSSCG00000039875
ENSG00000140807
Naked cuticle homolog 1
Low tissue specificity
Detected in many
NKX2-8
ENSSSCG00000001944
ENSG00000136327
NK2 homeobox 8
Tissue enhanced
Detected in some
brain:
12.1
lens:
10.3
male glands:
5.4
NOL3
ENSSSCG00000040125
ENSG00000140939
Nucleolar protein 3
Tissue enhanced
Detected in many
lens:
31.6
skeletal muscle:
57.0
NPPC
ENSSSCG00000026852
ENSG00000163273
C-type natriuretic peptide CNP-22 CNP-29 CNP-53
Tissue enriched
Detected in some
male glands:
300.0
NQO2
ENSSSCG00000020758
ENSG00000124588
N-ribosyldihydronicotinamide:quinone reductase 2
Low tissue specificity
Detected in all
NSDHL
ENSSSCG00000012758
ENSG00000147383
Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
Tissue enhanced
Detected in all
testis:
52.1
NT5C1A
ENSSSCG00000003662
ENSG00000116981
5'-nucleotidase, cytosolic IA
Group enriched
Detected in some
heart:
74.3
skeletal muscle:
50.7
NT5E
ENSSSCG00000004291
ENSG00000135318
5'-nucleotidase ecto
Tissue enhanced
Detected in all
cartilage:
55.2
synovial tissue:
34.8
NTHL1
ENSSSCG00000008039
ENSG00000065057
Nth like DNA glycosylase 1
Low tissue specificity
Detected in all
NUMBL
ENSSSCG00000023228
ENSG00000105245
NUMB like, endocytic adaptor protein
Low tissue specificity
Detected in all
OAZ2
ENSSSCG00000004550
ENSG00000180304
Ornithine decarboxylase antizyme 2 isoform 1
Low tissue specificity
Detected in all
OBSL1
ENSSSCG00000028052
ENSG00000124006
Obscurin like 1
Low tissue specificity
Detected in all
OGN
ENSSSCG00000034607
ENSG00000106809
Mimecan precursor
Tissue enhanced
Detected in all
choroid plexus:
87.6
OTUD7B
ENSSSCG00000006663
ENSG00000264522
OTU deubiquitinase 7B
Low tissue specificity
Detected in all
P2RX6
ENSSSCG00000010101
ENSG00000099957
Purinergic receptor P2X 6
Low tissue specificity
Detected in all
P2RY1
ENSSSCG00000011721
ENSG00000169860
Purinergic receptor P2Y1
Tissue enhanced
Detected in many
smooth muscle:
46.3
PAFAH1B3
ENSSSCG00000029070
ENSG00000079462
Platelet activating factor acetylhydrolase 1b catalytic subunit 3
Tissue enhanced
Detected in all
brain:
54.1
PALM
ENSSSCG00000039575
ENSG00000099864
Paralemmin-1
Tissue enriched
Detected in all
lens:
205.3
PAM
ENSSSCG00000014184
ENSG00000145730
Peptidylglycine alpha-amidating monooxygenase
Tissue enhanced
Detected in all
cartilage:
159.1
heart:
115.9
PARVB
ENSSSCG00000000024
ENSG00000188677
Parvin beta
Tissue enhanced
Detected in many
skeletal muscle:
39.7
PBX1
ENSSSCG00000006331
ENSG00000185630
PBX homeobox 1
Low tissue specificity
Detected in all
PC
ENSSSCG00000012926
ENSG00000173599
Pyruvate carboxylase, mitochondrial
Tissue enriched
Detected in many
adipose tissue:
202.1
PCED1A
ENSSSCG00000007168
ENSG00000132635
PC-esterase domain-containing protein 1A
Low tissue specificity
Detected in all
PCMTD2
ENSSSCG00000038617
ENSG00000203880
Protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2
Low tissue specificity
Detected in all
PCSK6
ENSSSCG00000005785
ENSG00000140479
Proprotein convertase subtilisin/kexin type 6
Tissue enhanced
Detected in many
brain:
47.5
liver:
57.1
synovial tissue:
32.3
PDE4D
ENSSSCG00000016929
ENSG00000113448
Phosphodiesterase 4D
Tissue enhanced
Detected in many
cartilage:
53.8
PDE7B
ENSSSCG00000004165
ENSG00000171408
Phosphodiesterase 7B
Low tissue specificity
Detected in all
PDGFC
ENSSSCG00000024960
ENSG00000145431
Platelet derived growth factor C
Low tissue specificity
Detected in many
PDK2
ENSSSCG00000027198
ENSG00000005882
Pyruvate dehydrogenase kinase 2
Low tissue specificity
Detected in all
PDK4
ENSSSCG00000015334
ENSG00000004799
Pyruvate dehydrogenase kinase, isozyme 4
Tissue enhanced
Detected in many
choroid plexus:
112.5
skeletal muscle:
87.4
PDLIM3
ENSSSCG00000015796
ENSG00000154553
PDZ and LIM domain protein 3
Tissue enhanced
Detected in many
skeletal muscle:
162.1
PDZRN4
ENSSSCG00000000791
ENSG00000165966
PDZ domain containing ring finger 4
Tissue enhanced
Detected in many
choroid plexus:
19.5
skin:
31.0
smooth muscle:
23.3
PEMT
ENSSSCG00000018055
ENSG00000133027
Phosphatidylethanolamine N-methyltransferase
Tissue enriched
Detected in all
epididymis:
180.8
PFKM
ENSSSCG00000021129
ENSG00000152556
ATP-dependent 6-phosphofructokinase, muscle type
Tissue enhanced
Detected in many
heart:
66.0
skeletal muscle:
163.3
PHC2
ENSSSCG00000025344
ENSG00000134686
Polyhomeotic homolog 2
Low tissue specificity
Detected in all
PHKA1
ENSSSCG00000012411
ENSG00000067177
Phosphorylase kinase regulatory subunit alpha 1
Tissue enriched
Detected in all
skeletal muscle:
92.2
PHYHD1
ENSSSCG00000005665
ENSG00000175287
Phytanoyl-CoA dioxygenase domain containing 1
Tissue enhanced
Detected in many
bone marrow:
16.0
kidney:
19.2
liver:
19.9
PI4K2A
ENSSSCG00000010525
ENSG00000155252
Phosphatidylinositol 4-kinase type 2 alpha
Low tissue specificity
Detected in all
PID1
ENSSSCG00000035058
ENSG00000153823
PTB-containing, cubilin and LRP1-interacting protein
Tissue enhanced
Detected in all
cartilage:
70.1
choroid plexus:
63.6
PIK3IP1
ENSSSCG00000010026
ENSG00000100100
Phosphoinositide-3-kinase interacting protein 1
Low tissue specificity
Detected in all
PIK3R1
ENSSSCG00000016958
ENSG00000145675
Phosphoinositide-3-kinase regulatory subunit 1
Low tissue specificity
Detected in all
PINK1
ENSSSCG00000003506
ENSG00000158828
PTEN induced putative kinase 1
Low tissue specificity
Detected in all
PKD2
ENSSSCG00000009217
ENSG00000118762
Polycystin-2
Low tissue specificity
Detected in all
PLA2G6
ENSSSCG00000000110
ENSG00000184381
Phospholipase A2 group VI
Low tissue specificity
Detected in all
PLOD1
ENSSSCG00000003433
ENSG00000083444
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1
Tissue enhanced
Detected in all
cornea:
54.7
ovary:
65.1
PLOD2
ENSSSCG00000011689
ENSG00000152952
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
Tissue enhanced
Detected in many
cartilage:
73.6
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