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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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499 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LRRC38
ENSSSCG00000003449
ENSG00000162494
Leucine rich repeat containing 38
Tissue enhanced
Detected in some
brain:
10.0
cartilage:
8.6
epididymis:
5.9
heart:
7.6
LRRC57
ENSSSCG00000004726
ENSG00000180979
Leucine-rich repeat-containing protein 57
Low tissue specificity
Detected in all
LYPD6
ENSSSCG00000023627
ENSG00000187123
LY6/PLAUR domain containing 6
Tissue enhanced
Detected in many
lens:
42.4
penis:
30.9
MAOA
ENSSSCG00000012257
ENSG00000189221
Amine oxidase
Low tissue specificity
Detected in many
MAP1LC3A
ENSSSCG00000007281
ENSG00000101460
Microtubule-associated proteins 1A/1B light chain 3A
Low tissue specificity
Detected in all
MAP4K5
ENSSSCG00000036634
ENSG00000012983
Mitogen-activated protein kinase kinase kinase kinase 5
Low tissue specificity
Detected in all
MAP7D1
ENSSSCG00000003637
ENSG00000116871
MAP7 domain containing 1
Low tissue specificity
Detected in all
MAPK3
ENSSSCG00000040682
ENSG00000102882
Mitogen-activated protein kinase 3
Low tissue specificity
Detected in all
MARC1
ENSSSCG00000010829
ENSG00000186205
Mitochondrial amidoxime reducing component 1
Tissue enhanced
Detected in all
liver:
73.8
MARCH2
ENSSSCG00000013601
ENSG00000099785
E3 ubiquitin-protein ligase MARCH2
Low tissue specificity
Detected in all
MASP1
ENSSSCG00000011806
ENSG00000127241
Mannan-binding lectin serine protease 1 precursor
Group enriched
Detected in many
heart:
26.5
liver:
53.5
MBNL2
ENSSSCG00000009505
ENSG00000139793
Muscleblind like splicing regulator 2
Low tissue specificity
Detected in all
ME3
ENSSSCG00000014919
ENSG00000151376
NADP-dependent malic enzyme, mitochondrial
Low tissue specificity
Detected in all
MFGE8
ENSSSCG00000001834
ENSG00000140545
Lactadherin precursor
Tissue enriched
Detected in many
cartilage:
239.5
MGLL
ENSSSCG00000024134
ENSG00000074416
Monoglyceride lipase
Tissue enhanced
Detected in many
adipose tissue:
69.3
lens:
80.5
MGRN1
ENSSSCG00000007930
ENSG00000102858
Mahogunin ring finger 1
Low tissue specificity
Detected in all
MKX
ENSSSCG00000029783
ENSG00000150051
Mohawk homeobox
Tissue enhanced
Detected in many
cartilage:
33.3
penis:
37.4
MLIP
ENSSSCG00000001485
ENSG00000146147
Muscular LMNA interacting protein
Group enriched
Detected in some
heart:
106.4
skeletal muscle:
86.5
vagus nerve:
48.5
MMAB
ENSSSCG00000009932
ENSG00000139428
Methylmalonic aciduria (cobalamin deficiency) cblB type
Low tissue specificity
Detected in all
MN1
ENSSSCG00000009966
ENSG00000169184
MN1 proto-oncogene, transcriptional regulator
Tissue enhanced
Detected in many
cartilage:
60.6
skeletal muscle:
49.1
MPDZ
ENSSSCG00000005191
ENSG00000107186
Multiple PDZ domain crumbs cell polarity complex component
Low tissue specificity
Detected in all
MRPL58
ENSSSCG00000034406
ENSG00000167862
Peptidyl-tRNA hydrolase ICT1, mitochondrial
Low tissue specificity
Detected in all
MTFR1L
ENSSSCG00000003553
ENSG00000117640
Mitochondrial fission regulator 1 like
Low tissue specificity
Detected in all
MVD
ENSSSCG00000034905
ENSG00000167508
Mevalonate diphosphate decarboxylase
Low tissue specificity
Detected in all
MVK
ENSSSCG00000009931
ENSG00000110921
Mevalonate kinase
Tissue enriched
Detected in many
liver:
84.3
na
ENSSSCG00000000753
Low tissue specificity
Detected in all
na
ENSSSCG00000001830
Tissue enhanced
Detected in some
cartilage:
11.2
dura mater:
7.2
penis:
6.6
na
ENSSSCG00000002351
ENSG00000140043
Tissue enhanced
Detected in all
kidney:
48.4
liver:
52.3
na
ENSSSCG00000003451
ENSG00000162493
Tissue enhanced
Detected in many
cartilage:
53.1
na
ENSSSCG00000003839
ENSG00000162407
Tissue enhanced
Detected in all
cervix:
134.1
na
ENSSSCG00000004071
Low tissue specificity
Detected in all
na
ENSSSCG00000004274
ENSG00000112280
Tissue enriched
Detected in some
cartilage:
165.0
na
ENSSSCG00000004556
ENSG00000028528
Low tissue specificity
Detected in all
na
ENSSSCG00000005457
ENSG00000198121
Lysophosphatidic acid receptor 1
Tissue enhanced
Detected in many
brain:
47.5
cartilage:
77.7
na
ENSSSCG00000006490
ENSG00000198952
Low tissue specificity
Detected in all
na
ENSSSCG00000007085
Destrin
Tissue enhanced
Detected in all
smooth muscle:
163.5
na
ENSSSCG00000007264
ENSG00000101400
Tissue enhanced
Detected in all
heart:
38.4
skeletal muscle:
42.7
na
ENSSSCG00000007978
ENSG00000188536,ENSG00000206172
Tissue enriched
Detected in many
dura mater:
1041.8
na
ENSSSCG00000008422
ENSG00000243244
Tissue enhanced
Detected in all
cervix:
81.1
na
ENSSSCG00000008488
ENSG00000115841
Tissue enhanced
Detected in all
liver:
55.0
na
ENSSSCG00000009128
ENSG00000138660
Low tissue specificity
Detected in all
na
ENSSSCG00000010104
ENSG00000152082,ENSG00000173272
Low tissue specificity
Detected in all
na
ENSSSCG00000010703
ENSG00000166033
Tissue enhanced
Detected in all
lens:
171.5
na
ENSSSCG00000010850
Low tissue specificity
Detected in all
na
ENSSSCG00000011910
Tissue enhanced
Detected in all
adrenal gland:
83.7
testis:
47.9
na
ENSSSCG00000012731
ENSG00000010404
Low tissue specificity
Detected in all
na
ENSSSCG00000013611
Tissue enhanced
Detected in some
adipose tissue:
3.6
cornea:
2.7
kidney:
1.8
liver:
2.0
na
ENSSSCG00000013907
Tissue enhanced
Detected in many
brain:
9.5
liver:
12.3
na
ENSSSCG00000014203
ENSG00000171444
Tissue enhanced
Detected in all
cartilage:
46.3
na
ENSSSCG00000014314
Tissue enhanced
Detected in many
cartilage:
23.9
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