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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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499 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GFPT2
ENSSSCG00000014012
ENSG00000131459
Glutamine-fructose-6-phosphate transaminase 2
Tissue enhanced
Detected in many
cartilage:
41.9
ovary:
57.7
synovial tissue:
75.8
GLTP
ENSSSCG00000039012
ENSG00000139433
Glycolipid transfer protein
Low tissue specificity
Detected in all
GNB4
ENSSSCG00000037583
ENSG00000114450
G protein subunit beta 4
Low tissue specificity
Detected in many
GOT1
ENSSSCG00000010537
ENSG00000120053
Aspartate aminotransferase, cytoplasmic
Tissue enhanced
Detected in all
heart:
69.7
skeletal muscle:
62.1
GP1BB
ENSSSCG00000030732
ENSG00000203618
Platelet glycoprotein Ib beta chain precursor
Tissue enhanced
Detected in many
bone marrow:
14.4
cartilage:
17.4
GP9
ENSSSCG00000031176
ENSG00000169704
Platelet glycoprotein IX precursor
Low tissue specificity
Detected in many
GPC1
ENSSSCG00000016364
ENSG00000063660
Glypican 1
Low tissue specificity
Detected in all
GPHN
ENSSSCG00000002285
ENSG00000171723
Gephyrin
Low tissue specificity
Detected in all
GULP1
ENSSSCG00000016033
ENSG00000144366
GULP, engulfment adaptor PTB domain containing 1
Tissue enhanced
Detected in many
choroid plexus:
95.7
GYG1
ENSSSCG00000011698
ENSG00000163754
Glycogenin 1
Tissue enhanced
Detected in all
cornea:
77.3
skeletal muscle:
55.0
HACD1
ENSSSCG00000038007
ENSG00000165996
3-hydroxyacyl-CoA dehydratase 1
Low tissue specificity
Detected in all
HBB
ENSSSCG00000014725
Hemoglobin subunit beta
Tissue enriched
Detected in many
dura mater:
663.3
HBQ1
ENSSSCG00000038804
ENSG00000086506
Hemoglobin subunit theta 1
Low tissue specificity
Detected in many
HCFC1R1
ENSSSCG00000027252
ENSG00000103145
Host cell factor C1 regulator 1
Low tissue specificity
Detected in all
HEY2
ENSSSCG00000004223
ENSG00000135547
Hairy/enhancer-of-split related with YRPW motif protein 2
Tissue enhanced
Detected in many
heart:
20.6
penis:
24.7
HIP1
ENSSSCG00000007700
ENSG00000127946
Huntingtin interacting protein 1
Low tissue specificity
Detected in all
HMGCR
ENSSSCG00000014080
ENSG00000113161
3-hydroxy-3-methylglutaryl-coenzyme A reductase
Tissue enhanced
Detected in all
ovary:
72.7
HMGCS1
ENSSSCG00000016872
ENSG00000112972
Hydroxymethylglutaryl-CoA synthase, cytoplasmic
Tissue enhanced
Detected in all
brain:
90.9
ovary:
47.5
HOMER2
ENSSSCG00000001804
ENSG00000103942
Homer scaffolding protein 2
Tissue enhanced
Detected in many
salivary gland:
47.6
HSD17B7
ENSSSCG00000006337
ENSG00000132196
3-keto-steroid reductase
Tissue enhanced
Detected in all
liver:
28.5
HSPB8
ENSSSCG00000009844
ENSG00000152137
Heat shock protein family B (small) member 8
Tissue enhanced
Detected in many
skeletal muscle:
123.2
HYAL2
ENSSSCG00000011405
ENSG00000068001
Hyaluronidase-2 precursor
Tissue enhanced
Detected in all
mesothelial tissue:
74.1
IFIT5
ENSSSCG00000010454
ENSG00000152778
Interferon-induced protein with tetratricopeptide repeats 5
Low tissue specificity
Detected in all
IGDCC4
ENSSSCG00000004931
ENSG00000103742
Immunoglobulin superfamily DCC subclass member 4
Tissue enhanced
Detected in many
adrenal gland:
39.0
IL17RD
ENSSSCG00000011463
ENSG00000144730
Interleukin 17 receptor D
Tissue enhanced
Detected in many
pituitary gland:
26.0
INSC
ENSSSCG00000013385
ENSG00000188487
INSC, spindle orientation adaptor protein
Tissue enhanced
Detected in many
dura mater:
22.9
vagus nerve:
22.2
IPO13
ENSSSCG00000029430
ENSG00000117408
Importin 13
Tissue enhanced
Detected in all
skeletal muscle:
62.6
ITGA7
ENSSSCG00000036237
ENSG00000135424
Integrin subunit alpha 7
Tissue enhanced
Detected in many
adipose tissue:
76.7
ITGAV
ENSSSCG00000016027
ENSG00000138448
Integrin alpha-V precursor
Tissue enhanced
Detected in all
ovary:
65.8
ITSN1
ENSSSCG00000024614
ENSG00000205726
Intersectin 1
Low tissue specificity
Detected in all
JAM2
ENSSSCG00000023028
ENSG00000154721
Junctional adhesion molecule 2
Tissue enhanced
Detected in all
brain:
42.6
dura mater:
46.8
JAM3
ENSSSCG00000015256
ENSG00000166086
Junctional adhesion molecule 3
Tissue enhanced
Detected in all
brain:
51.8
lens:
42.1
JAZF1
ENSSSCG00000016691
ENSG00000153814
JAZF zinc finger 1
Tissue enhanced
Detected in many
lens:
89.3
JCAD
ENSSSCG00000011020
ENSG00000165757
Junctional cadherin 5 associated
Low tissue specificity
Detected in all
KBTBD12
ENSSSCG00000011622
ENSG00000187715
Kelch repeat and BTB domain containing 12
Tissue enhanced
Detected in many
heart:
27.0
skeletal muscle:
24.2
KCNA5
ENSSSCG00000021596
ENSG00000130037
Potassium voltage-gated channel subfamily A member 5
Tissue enhanced
Detected in many
cornea:
25.9
penis:
23.6
KCNJ18
ENSSSCG00000034773
ENSG00000260458
Potassium voltage-gated channel subfamily J member 18
Group enriched
Detected in many
brain:
21.1
lens:
77.9
skeletal muscle:
30.3
KCNJ2
ENSSSCG00000039947
ENSG00000123700
Inward rectifier potassium channel 2
Tissue enhanced
Detected in many
dura mater:
39.5
heart:
56.6
skeletal muscle:
29.9
KCNN3
ENSSSCG00000006542
ENSG00000143603
Small conductance calcium-activated potassium channel protein 3
Tissue enhanced
Detected in many
penis:
52.7
smooth muscle:
52.1
KIFC3
ENSSSCG00000002812
ENSG00000140859
Kinesin family member C3
Low tissue specificity
Detected in all
KIZ
ENSSSCG00000007108
ENSG00000088970
Kizuna centrosomal protein
Low tissue specificity
Detected in all
KLF9
ENSSSCG00000021646
ENSG00000119138
Krueppel-like factor 9
Low tissue specificity
Detected in all
KLHL22
ENSSSCG00000010108
ENSG00000099910
Kelch like family member 22
Low tissue specificity
Detected in all
LEFTY2
ENSSSCG00000032299
Left-right determination factor 2 precursor
Tissue enhanced
Detected in some
brain:
7.6
testis:
16.5
LHFPL6
ENSSSCG00000029855
ENSG00000183722
LHFPL tetraspan subfamily member 6
Tissue enhanced
Detected in all
cervix:
76.3
LIX1L
ENSSSCG00000026502
ENSG00000271601
Limb and CNS expressed 1 like
Low tissue specificity
Detected in all
LLGL1
ENSSSCG00000040859
ENSG00000131899
LLGL1, scribble cell polarity complex component
Tissue enhanced
Detected in all
brain:
44.4
LRFN4
ENSSSCG00000039360
ENSG00000173621
Leucine rich repeat and fibronectin type III domain containing 4
Tissue enhanced
Detected in many
adipose tissue:
35.7
LRIG1
ENSSSCG00000011499
ENSG00000144749
Leucine rich repeats and immunoglobulin like domains 1
Tissue enhanced
Detected in all
male glands:
68.7
LRRC20
ENSSSCG00000010267
ENSG00000172731
Leucine rich repeat containing 20
Tissue enhanced
Detected in all
skeletal muscle:
38.2
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