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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CPSF3
ENSSSCG00000020799
ENSG00000119203
Cleavage and polyadenylation specific factor 3
Low tissue specificity
Detected in all
CRBN
ENSSSCG00000011530
ENSG00000113851
Cereblon
Tissue enhanced
Detected in all
lens:
55.5
CRCP
ENSSSCG00000032119
ENSG00000241258
CGRP receptor component
Low tissue specificity
Detected in all
CREB1
ENSSSCG00000034395
ENSG00000118260
CAMP responsive element binding protein 1
Low tissue specificity
Detected in all
CREB3
ENSSSCG00000005318
ENSG00000107175
Cyclic AMP-responsive element-binding protein 3
Tissue enriched
Detected in all
male glands:
104.0
CREBL2
ENSSSCG00000034418
ENSG00000111269
CAMP responsive element binding protein like 2
Low tissue specificity
Detected in all
CREBRF
ENSSSCG00000016986
ENSG00000164463
CREB3 regulatory factor
Low tissue specificity
Detected in all
CRIPT
ENSSSCG00000039935
ENSG00000119878
CXXC repeat containing interactor of PDZ3 domain
Low tissue specificity
Detected in all
CRLS1
ENSSSCG00000040202
ENSG00000088766
Cardiolipin synthase 1
Low tissue specificity
Detected in all
CSE1L
ENSSSCG00000025534
ENSG00000124207
Exportin-2
Low tissue specificity
Detected in all
CSNK1A1
ENSSSCG00000014435
ENSG00000113712
Casein kinase 1 alpha 1
Low tissue specificity
Detected in all
CSNK1G3
ENSSSCG00000014240
ENSG00000151292
Casein kinase 1 gamma 3
Low tissue specificity
Detected in all
CSPP1
ENSSSCG00000006202
ENSG00000104218
Centrosome and spindle pole associated protein 1
Low tissue specificity
Detected in all
CSRP2
ENSSSCG00000000951
ENSG00000175183
Cysteine and glycine rich protein 2
Tissue enhanced
Detected in all
male glands:
75.8
CSTF2
ENSSSCG00000012486
ENSG00000101811
Cleavage stimulation factor subunit 2
Low tissue specificity
Detected in all
CSTF2T
ENSSSCG00000010430
ENSG00000177613
Cleavage stimulation factor subunit 2 tau variant
Low tissue specificity
Detected in all
CTDSPL2
ENSSSCG00000035827
ENSG00000137770
CTD small phosphatase like 2
Low tissue specificity
Detected in all
CTNNB1
ENSSSCG00000011274
ENSG00000168036
Catenin beta-1
Low tissue specificity
Detected in all
CTNNBL1
ENSSSCG00000007337
ENSG00000132792
Beta-catenin-like protein 1
Low tissue specificity
Detected in all
CUL1
ENSSSCG00000015455
ENSG00000055130
Cullin 1
Low tissue specificity
Detected in all
CUL2
ENSSSCG00000011104
ENSG00000108094
Cullin 2
Low tissue specificity
Detected in all
CUL3
ENSSSCG00000016234
ENSG00000036257
Cullin 3
Tissue enhanced
Detected in all
lens:
78.4
testis:
58.9
CUL4B
ENSSSCG00000029478
ENSG00000158290
Cullin 4B
Tissue enhanced
Detected in all
pituitary gland:
69.0
CUL5
ENSSSCG00000029198
ENSG00000166266
Cullin 5
Low tissue specificity
Detected in all
CWC15
ENSSSCG00000014961
ENSG00000150316
CWC15 spliceosome associated protein homolog
Low tissue specificity
Detected in all
CWC27
ENSSSCG00000016942
ENSG00000153015
Peptidyl-prolyl cis-trans isomerase CWC27 homolog
Low tissue specificity
Detected in all
CYB5R4
ENSSSCG00000022994
ENSG00000065615
Cytochrome b5 reductase 4
Low tissue specificity
Detected in all
CYLD
ENSSSCG00000040286
ENSG00000083799
CYLD lysine 63 deubiquitinase
Low tissue specificity
Detected in all
DAD1
ENSSSCG00000002050
ENSG00000129562
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1
Tissue enhanced
Detected in all
male glands:
84.0
DARS
ENSSSCG00000015689
ENSG00000115866
Aspartyl-tRNA synthetase
Low tissue specificity
Detected in all
DARS2
ENSSSCG00000015492
ENSG00000117593
Aspartyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
DAZAP2
ENSSSCG00000022674
ENSG00000183283
DAZ-associated protein 2
Low tissue specificity
Detected in all
DBI
ENSSSCG00000032213
ENSG00000155368
Acyl-CoA-binding protein DBI(32-86)
Tissue enhanced
Detected in all
brain:
215.4
DBT
ENSSSCG00000006866
ENSG00000137992
Dihydrolipoamide branched chain transacylase E2
Low tissue specificity
Detected in all
DCAF13
ENSSSCG00000006048
ENSG00000164934
DDB1 and CUL4 associated factor 13
Low tissue specificity
Detected in all
DCP2
ENSSSCG00000014204
ENSG00000172795
Decapping mRNA 2
Low tissue specificity
Detected in all
DCTD
ENSSSCG00000015775
ENSG00000129187
DCMP deaminase
Tissue enhanced
Detected in all
male glands:
56.5
DCTN3
ENSSSCG00000010972
ENSG00000137100
Dynactin subunit 3
Tissue enhanced
Detected in all
lens:
75.2
DCTN5
ENSSSCG00000040943
ENSG00000166847
Dynactin subunit 5
Low tissue specificity
Detected in all
DCTN6
ENSSSCG00000038895
ENSG00000104671
Dynactin subunit 6
Low tissue specificity
Detected in all
DCUN1D1
ENSSSCG00000022783
ENSG00000043093
Defective in cullin neddylation 1 domain containing 1
Low tissue specificity
Detected in all
DCUN1D4
ENSSSCG00000008831
ENSG00000109184
Defective in cullin neddylation 1 domain containing 4
Tissue enhanced
Detected in all
brain:
28.6
DCUN1D5
ENSSSCG00000014989
ENSG00000137692
Defective in cullin neddylation 1 domain containing 5
Low tissue specificity
Detected in all
DDA1
ENSSSCG00000031251
ENSG00000130311
DET1 and DDB1 associated 1
Low tissue specificity
Detected in all
DDX1
ENSSSCG00000008619
ENSG00000079785
DEAD-box helicase 1
Tissue enhanced
Detected in all
lens:
103.4
DDX18
ENSSSCG00000015712
ENSG00000088205
DEAD-box helicase 18
Low tissue specificity
Detected in all
DDX3X
ENSSSCG00000012252
ENSG00000215301
ATP-dependent RNA helicase DDX3X
Low tissue specificity
Detected in all
DDX42
ENSSSCG00000017289
ENSG00000198231
DEAD-box helicase 42
Low tissue specificity
Detected in all
DDX52
ENSSSCG00000021275
ENSG00000278053
DExD-box helicase 52
Low tissue specificity
Detected in all
DDX6
ENSSSCG00000015097
ENSG00000110367
DEAD-box helicase 6
Low tissue specificity
Detected in all
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