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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other congenital disorders
Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CHORDC1
ENSSSCG00000014934
ENSG00000110172
Cysteine and histidine-rich domain-containing protein 1
Low tissue specificity
Detected in all
CHP1
ENSSSCG00000004751
ENSG00000187446
Calcineurin like EF-hand protein 1
Tissue enhanced
Detected in all
large intestine:
87.5
CHURC1
ENSSSCG00000022147
ENSG00000258289
Churchill domain containing 1
Low tissue specificity
Detected in all
CIAO1
ENSSSCG00000008130
ENSG00000144021
Cytosolic iron-sulfur assembly component 1
Low tissue specificity
Detected in all
CIAPIN1
ENSSSCG00000029519
ENSG00000005194
Cytokine induced apoptosis inhibitor 1
Low tissue specificity
Detected in all
CIR1
ENSSSCG00000027516
ENSG00000138433
Corepressor interacting with RBPJ 1
Low tissue specificity
Detected in all
CISD2
ENSSSCG00000009164
ENSG00000145354
CDGSH iron sulfur domain 2
Tissue enhanced
Detected in all
male glands:
44.6
CKAP5
ENSSSCG00000013249
ENSG00000175216
Cytoskeleton associated protein 5
Low tissue specificity
Detected in all
CLDN12
ENSSSCG00000035114
ENSG00000157224
Claudin-12
Low tissue specificity
Detected in all
CLDND1
ENSSSCG00000011980
ENSG00000080822
Claudin domain-containing protein 1
Low tissue specificity
Detected in all
CLGN
ENSSSCG00000026360
ENSG00000153132
Calmegin precursor
Group enriched
Detected in many
choroid plexus:
20.8
male glands:
21.9
testis:
81.2
CLNS1A
ENSSSCG00000014881
ENSG00000074201
Chloride nucleotide-sensitive channel 1A
Low tissue specificity
Detected in all
CLTA
ENSSSCG00000037131
ENSG00000122705
Clathrin light chain A
Low tissue specificity
Detected in all
CLTB
ENSSSCG00000014058
ENSG00000175416
Clathrin light chain B
Low tissue specificity
Detected in all
CMAS
ENSSSCG00000034733
ENSG00000111726
Cytidine monophosphate N-acetylneuraminic acid synthetase
Low tissue specificity
Detected in all
CMPK1
ENSSSCG00000003885
ENSG00000162368
Cytidine/uridine monophosphate kinase 1
Low tissue specificity
Detected in all
CMTR2
ENSSSCG00000033156
ENSG00000180917
Cap methyltransferase 2
Low tissue specificity
Detected in all
CNEP1R1
ENSSSCG00000036005
ENSG00000205423
CTD nuclear envelope phosphatase 1 regulatory subunit 1
Low tissue specificity
Detected in all
CNIH1
ENSSSCG00000027256
ENSG00000100528
Protein cornichon homolog 1
Low tissue specificity
Detected in all
CNIH4
ENSSSCG00000035034
ENSG00000143771
Cornichon family AMPA receptor auxiliary protein 4
Low tissue specificity
Detected in all
CNOT6
ENSSSCG00000014009
ENSG00000113300
CCR4-NOT transcription complex subunit 6
Low tissue specificity
Detected in all
CNOT7
ENSSSCG00000006983
ENSG00000198791
CCR4-NOT transcription complex subunit 7
Low tissue specificity
Detected in all
CNOT8
ENSSSCG00000017067
ENSG00000155508
CCR4-NOT transcription complex subunit 8
Low tissue specificity
Detected in all
CNST
ENSSSCG00000010882
ENSG00000162852
Consortin, connexin sorting protein
Tissue enriched
Detected in all
pineal gland:
78.6
COA4
ENSSSCG00000014830
ENSG00000181924
Cytochrome c oxidase assembly factor 4 homolog
Low tissue specificity
Detected in all
COG4
ENSSSCG00000027973
ENSG00000103051
Conserved oligomeric Golgi complex subunit 4
Low tissue specificity
Detected in all
COL4A3BP
ENSSSCG00000014081
ENSG00000113163
Collagen type IV alpha 3 binding protein
Low tissue specificity
Detected in all
COMMD1
ENSSSCG00000008376
ENSG00000173163
Copper metabolism domain containing 1
Tissue enhanced
Detected in all
lens:
50.1
COMMD10
ENSSSCG00000014223
ENSG00000145781
COMM domain-containing protein 10
Low tissue specificity
Detected in all
COMMD2
ENSSSCG00000011705
ENSG00000114744
COMM domain containing 2
Tissue enhanced
Detected in all
choroid plexus:
35.9
COMMD4
ENSSSCG00000001884
ENSG00000140365
COMM domain containing 4
Low tissue specificity
Detected in all
COMMD8
ENSSSCG00000033373
ENSG00000169019
COMM domain containing 8
Tissue enhanced
Detected in all
lens:
32.4
COMMD9
ENSSSCG00000013293
ENSG00000110442
COMM domain containing 9
Tissue enhanced
Detected in all
brain:
70.0
COP1
ENSSSCG00000015509
ENSG00000143207
COP1, E3 ubiquitin ligase
Low tissue specificity
Detected in all
COPA
ENSSSCG00000006386
ENSG00000122218
Coatomer protein complex subunit alpha
Low tissue specificity
Detected in all
COPB1
ENSSSCG00000013392
ENSG00000129083
Coatomer subunit beta
Tissue enhanced
Detected in all
male glands:
88.3
COPB2
ENSSSCG00000011662
ENSG00000184432
Coatomer protein complex subunit beta 2
Tissue enhanced
Detected in all
male glands:
114.9
COPS2
ENSSSCG00000004652
ENSG00000166200
COP9 signalosome complex subunit 2
Low tissue specificity
Detected in all
COPS5
ENSSSCG00000006203
ENSG00000121022
COP9 signalosome complex subunit 5
Tissue enhanced
Detected in all
lens:
53.4
COPS6
ENSSSCG00000034893
ENSG00000168090
COP9 signalosome complex subunit 6
Tissue enhanced
Detected in all
lens:
90.8
COPS8
ENSSSCG00000016323
ENSG00000198612
COP9 signalosome subunit 8
Low tissue specificity
Detected in all
COQ10B
ENSSSCG00000016076
ENSG00000115520
Coenzyme Q10B
Low tissue specificity
Detected in all
COX11
ENSSSCG00000031433
ENSG00000166260
COX11, cytochrome c oxidase copper chaperone
Low tissue specificity
Detected in all
COX15
ENSSSCG00000010541
ENSG00000014919
COX15, cytochrome c oxidase assembly homolog
Low tissue specificity
Detected in all
COX16
ENSSSCG00000002316
ENSG00000133983
COX16, cytochrome c oxidase assembly homolog
Tissue enhanced
Detected in all
lens:
34.1
COX6A1
ENSSSCG00000039265
ENSG00000111775
Cytochrome c oxidase subunit VIa polypeptide 1
Low tissue specificity
Detected in all
COX7A2
ENSSSCG00000004480
Cytochrome c oxidase subunit 7A2, mitochondrial
Tissue enhanced
Detected in all
testis:
75.3
COX7A2L
ENSSSCG00000008466
ENSG00000115944
Cytochrome c oxidase subunit 7A2 like
Low tissue specificity
Detected in all
CPOX
ENSSSCG00000011978
ENSG00000080819
Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial
Tissue enhanced
Detected in all
liver:
32.0
CPSF2
ENSSSCG00000002447
ENSG00000165934
Cleavage and polyadenylation specific factor 2
Low tissue specificity
Detected in all
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