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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
9
10
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CCDC25
ENSSSCG00000024972
ENSG00000147419
Coiled-coil domain-containing protein 25
Low tissue specificity
Detected in all
CCDC28A
ENSSSCG00000004148
ENSG00000024862
Coiled-coil domain-containing protein 28A
Tissue enhanced
Detected in all
male glands:
33.4
CCDC32
ENSSSCG00000038033
ENSG00000128891
Coiled-coil domain containing 32
Low tissue specificity
Detected in all
CCDC34
ENSSSCG00000013336
ENSG00000109881
Coiled-coil domain containing 34
Tissue enhanced
Detected in all
testis:
33.7
CCDC47
ENSSSCG00000028698
ENSG00000108588
Coiled-coil domain containing 47
Low tissue specificity
Detected in all
CCDC6
ENSSSCG00000010211
ENSG00000108091
Coiled-coil domain containing 6
Tissue enhanced
Detected in all
cervix:
87.3
lens:
97.5
CCNB1IP1
ENSSSCG00000002144
ENSG00000100814
Cyclin B1 interacting protein 1
Low tissue specificity
Detected in all
CCNDBP1
ENSSSCG00000034771
ENSG00000166946
Cyclin D1 binding protein 1
Low tissue specificity
Detected in all
CCNH
ENSSSCG00000014147
ENSG00000134480
Cyclin-H
Low tissue specificity
Detected in all
CCPG1
ENSSSCG00000004610
ENSG00000260916
Cell cycle progression protein 1
Low tissue specificity
Detected in all
CCSER2
ENSSSCG00000010351
ENSG00000107771
Coiled-coil serine rich protein 2
Low tissue specificity
Detected in all
CCT2
ENSSSCG00000000496
ENSG00000166226
T-complex protein 1 subunit beta
Tissue enhanced
Detected in all
lens:
68.1
CCT3
ENSSSCG00000006487
ENSG00000163468
T-complex protein 1 subunit gamma
Tissue enhanced
Detected in all
lens:
89.6
CCT4
ENSSSCG00000008377
ENSG00000115484
Chaperonin containing TCP1 subunit 4
Low tissue specificity
Detected in all
CCT5
ENSSSCG00000024126
ENSG00000150753
T-complex protein 1 subunit epsilon
Low tissue specificity
Detected in all
CCT7
ENSSSCG00000008303
ENSG00000135624
T-complex protein 1 subunit eta
Tissue enhanced
Detected in all
lens:
50.3
CCT8
ENSSSCG00000026761
ENSG00000156261
Chaperonin containing TCP1 subunit 8
Low tissue specificity
Detected in all
CD2BP2
ENSSSCG00000007791
ENSG00000169217
CD2 cytoplasmic tail binding protein 2
Low tissue specificity
Detected in all
CD47
ENSSSCG00000011942
ENSG00000196776
Leukocyte surface antigen CD47
Low tissue specificity
Detected in all
CDADC1
ENSSSCG00000031598
ENSG00000102543
Cytidine and dCMP deaminase domain containing 1
Low tissue specificity
Detected in all
CDC123
ENSSSCG00000011112
ENSG00000151465
Cell division cycle protein 123 homolog
Tissue enhanced
Detected in all
pineal gland:
57.3
CDC23
ENSSSCG00000014325
ENSG00000094880
Cell division cycle protein 23 homolog
Low tissue specificity
Detected in all
CDC25A
ENSSSCG00000021494
ENSG00000164045
Cell division cycle 25A
Low tissue specificity
Detected in all
CDC26
ENSSSCG00000033177
ENSG00000176386
Cell division cycle 26
Low tissue specificity
Detected in all
CDC27
ENSSSCG00000017308
ENSG00000004897
Cell division cycle 27
Low tissue specificity
Detected in all
CDC37L1
ENSSSCG00000005219
ENSG00000106993
Cell division cycle 37 like 1
Low tissue specificity
Detected in all
CDC40
ENSSSCG00000004403
ENSG00000168438
Cell division cycle 40
Low tissue specificity
Detected in all
CDC42SE2
ENSSSCG00000036686
ENSG00000158985
CDC42 small effector 2
Low tissue specificity
Detected in all
CDK17
ENSSSCG00000028182
ENSG00000059758
Cyclin dependent kinase 17
Tissue enhanced
Detected in all
brain:
62.5
CDK7
ENSSSCG00000016961
ENSG00000134058
Cyclin-dependent kinase 7
Low tissue specificity
Detected in all
CDKN2AIPNL
ENSSSCG00000037127
ENSG00000237190
CDKN2AIP N-terminal-like protein
Low tissue specificity
Detected in all
CDO1
ENSSSCG00000014219
ENSG00000129596
Cysteine dioxygenase type 1
Group enriched
Detected in many
lens:
88.3
liver:
54.7
male glands:
203.4
CEBPZ
ENSSSCG00000008493
ENSG00000115816
CCAAT/enhancer binding protein zeta
Low tissue specificity
Detected in all
CENPK
ENSSSCG00000016946
ENSG00000123219
Centromere protein K
Low tissue specificity
Detected in all
CENPM
ENSSSCG00000035991
ENSG00000100162
Centromere protein M
Tissue enhanced
Detected in all
lens:
53.2
CEP41
ENSSSCG00000016556
ENSG00000106477
Centrosomal protein 41
Low tissue specificity
Detected in all
CEP78
ENSSSCG00000005286
ENSG00000148019
Centrosomal protein 78
Low tissue specificity
Detected in all
CEPT1
ENSSSCG00000029918
ENSG00000134255
Choline/ethanolamine phosphotransferase 1
Tissue enhanced
Detected in all
male glands:
43.3
CERS5
ENSSSCG00000024932
ENSG00000139624
Ceramide synthase 5
Low tissue specificity
Detected in all
CERS6
ENSSSCG00000032715
ENSG00000172292
Ceramide synthase 6
Tissue enhanced
Detected in many
lens:
30.5
CETN3
ENSSSCG00000014151
ENSG00000153140
Centrin 3
Low tissue specificity
Detected in all
CFAP97
ENSSSCG00000015791
ENSG00000164323
Cilia and flagella associated protein 97
Tissue enriched
Detected in all
testis:
129.9
CFL1
ENSSSCG00000012974
Cofilin-1
Low tissue specificity
Detected in all
CGGBP1
ENSSSCG00000032182
ENSG00000163320
CGG triplet repeat binding protein 1
Low tissue specificity
Detected in all
CGRRF1
ENSSSCG00000021451
ENSG00000100532
Cell growth regulator with ring finger domain 1
Low tissue specificity
Detected in all
CHCHD4
ENSSSCG00000011604
ENSG00000163528
Mitochondrial intermembrane space import and assembly protein 40
Low tissue specificity
Detected in all
CHD9
ENSSSCG00000033591
ENSG00000177200
Chromodomain helicase DNA binding protein 9
Low tissue specificity
Detected in all
CHM
ENSSSCG00000012463
ENSG00000188419
CHM, Rab escort protein 1
Tissue enhanced
Detected in all
lens:
51.9
CHMP2B
ENSSSCG00000011997
ENSG00000083937
Charged multivesicular body protein 2b
Low tissue specificity
Detected in all
CHMP5
ENSSSCG00000010995
ENSG00000086065
Charged multivesicular body protein 5
Low tissue specificity
Detected in all
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