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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C12orf29
ENSSSCG00000000925
ENSG00000133641
Uncharacterized protein C12orf29 homolog
Tissue enhanced
Detected in all
lens:
32.6
C12orf4
ENSSSCG00000000723
ENSG00000047621
homolog isoform 2
Low tissue specificity
Detected in all
C12orf57
ENSSSCG00000040186
ENSG00000111678
Protein C10
Low tissue specificity
Detected in all
C12orf66
ENSSSCG00000039258
ENSG00000174206
Chromosome 12 open reading frame 66
Low tissue specificity
Detected in all
C14orf119
ENSSSCG00000002035
ENSG00000179933
Chromosome 14 open reading frame 119
Low tissue specificity
Detected in all
C14orf28
ENSSSCG00000030679
ENSG00000179476
Chromosome 14 open reading frame 28
Low tissue specificity
Detected in all
C16orf74
ENSSSCG00000002662
ENSG00000154102
Chromosome 16 open reading frame 74
Tissue enhanced
Detected in all
cervix:
91.3
C16orf87
ENSSSCG00000022333
ENSG00000155330
Chromosome 16 open reading frame 87
Tissue enhanced
Detected in all
testis:
31.0
C17orf58
ENSSSCG00000032181
ENSG00000186665
Chromosome 17 open reading frame 58
Tissue enhanced
Detected in many
brain:
48.1
C18orf25
ENSSSCG00000004500
ENSG00000152242
Chromosome 18 open reading frame 25
Low tissue specificity
Detected in all
C18orf32
ENSSSCG00000034415
ENSG00000177576
Chromosome 18 open reading frame 32
Tissue enhanced
Detected in all
male glands:
53.3
C21orf91
ENSSSCG00000033025
ENSG00000154642
Chromosome 21 open reading frame 91
Tissue enhanced
Detected in all
brain:
38.0
retina:
44.2
C22orf39
ENSSSCG00000040740
ENSG00000242259
Chromosome 22 open reading frame 39
Low tissue specificity
Detected in all
C2CD5
ENSSSCG00000000570
ENSG00000111731
C2 calcium dependent domain containing 5
Low tissue specificity
Detected in all
C2orf42
ENSSSCG00000008332
ENSG00000115998
Uncharacterized protein C2orf42 homolog
Tissue enhanced
Detected in all
testis:
39.8
C2orf49
ENSSSCG00000035390
ENSG00000135974
Chromosome 2 open reading frame 49
Low tissue specificity
Detected in all
C2orf76
ENSSSCG00000015718
ENSG00000186132
Chromosome 2 open reading frame 76
Low tissue specificity
Detected in all
C3orf33
ENSSSCG00000021495
ENSG00000174928
Chromosome 3 open reading frame 33
Low tissue specificity
Detected in all
C3orf38
ENSSSCG00000034645
ENSG00000179021
Chromosome 3 open reading frame 38
Low tissue specificity
Detected in all
C5orf22
ENSSSCG00000016808
ENSG00000082213
Chromosome 5 open reading frame 22
Low tissue specificity
Detected in all
C5orf24
ENSSSCG00000034954
ENSG00000181904
Chromosome 5 open reading frame 24
Low tissue specificity
Detected in all
C5orf51
ENSSSCG00000040855
ENSG00000205765
Chromosome 5 open reading frame 51
Low tissue specificity
Detected in all
C6orf120
ENSSSCG00000038931
ENSG00000185127
Chromosome 6 open reading frame 120
Tissue enhanced
Detected in all
male glands:
49.6
C6orf62
ENSSSCG00000038752
ENSG00000112308
Chromosome 6 open reading frame 62
Low tissue specificity
Detected in all
C7orf25
ENSSSCG00000016760
ENSG00000136197
Chromosome 7 open reading frame 25
Low tissue specificity
Detected in all
C9orf64
ENSSSCG00000034203
ENSG00000165118
Chromosome 9 open reading frame 64
Low tissue specificity
Detected in all
C9orf72
ENSSSCG00000011010
ENSG00000147894
Chromosome 9 open reading frame 72
Low tissue specificity
Detected in all
C9orf78
ENSSSCG00000030426
ENSG00000136819
Chromosome 9 open reading frame 78
Low tissue specificity
Detected in all
CAB39
ENSSSCG00000016266
ENSG00000135932
Calcium binding protein 39
Tissue enhanced
Detected in all
lens:
81.7
CACUL1
ENSSSCG00000038222
ENSG00000151893
CDK2 associated cullin domain 1
Low tissue specificity
Detected in all
CACYBP
ENSSSCG00000015504
ENSG00000116161
Calcyclin binding protein
Low tissue specificity
Detected in all
CALM1
ENSSSCG00000025768
Calmodulin
Tissue enhanced
Detected in all
brain:
160.5
CAND1
ENSSSCG00000028869
ENSG00000111530
Cullin associated and neddylation dissociated 1
Low tissue specificity
Detected in all
CANX
ENSSSCG00000014020
ENSG00000127022
Calnexin precursor
Low tissue specificity
Detected in all
CAP1
ENSSSCG00000003672
ENSG00000131236
Cyclase associated actin cytoskeleton regulatory protein 1
Low tissue specificity
Detected in all
CAPN7
ENSSSCG00000030697
ENSG00000131375
Calpain-7
Low tissue specificity
Detected in all
CAPRIN1
ENSSSCG00000013305
ENSG00000135387
Cell cycle associated protein 1
Low tissue specificity
Detected in all
CAPZA1
ENSSSCG00000006775
ENSG00000116489
F-actin-capping protein subunit alpha-1
Low tissue specificity
Detected in all
CAPZA2
ENSSSCG00000028113
F-actin-capping protein subunit alpha-2
Low tissue specificity
Detected in all
CARNMT1
ENSSSCG00000005271
ENSG00000156017
Carnosine N-methyltransferase 1
Low tissue specificity
Detected in all
CASC4
ENSSSCG00000023996
ENSG00000166734
Cancer susceptibility 4
Low tissue specificity
Detected in all
CASD1
ENSSSCG00000015327
ENSG00000127995
CAS1 domain containing 1
Low tissue specificity
Detected in all
CASK
ENSSSCG00000012253
ENSG00000147044
Calcium/calmodulin dependent serine protein kinase
Low tissue specificity
Detected in all
CASP9
ENSSSCG00000003460
ENSG00000132906
Caspase 9
Low tissue specificity
Detected in all
CBR4
ENSSSCG00000009717
ENSG00000145439
Carbonyl reductase 4
Low tissue specificity
Detected in all
CBX5
ENSSSCG00000039191
ENSG00000094916
Chromobox 5
Low tissue specificity
Detected in all
CCDC115
ENSSSCG00000035628
ENSG00000136710
Coiled-coil domain containing 115
Low tissue specificity
Detected in all
CCDC117
ENSSSCG00000032261
ENSG00000159873
Coiled-coil domain containing 117
Low tissue specificity
Detected in all
CCDC142
ENSSSCG00000008270
ENSG00000135637
Coiled-coil domain containing 142
Low tissue specificity
Detected in all
CCDC167
ENSSSCG00000036178
ENSG00000198937
Coiled-coil domain-containing protein 167
Low tissue specificity
Detected in all
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