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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
VCPKMT
ENSSSCG00000036735
ENSG00000100483
Valosin containing protein lysine methyltransferase
Low tissue specificity
Detected in all
VPS13C
ENSSSCG00000036431
ENSG00000129003
Vacuolar protein sorting 13 homolog C
Low tissue specificity
Detected in all
VPS18
ENSSSCG00000004757
ENSG00000104142
VPS18, CORVET/HOPS core subunit
Low tissue specificity
Detected in all
VPS25
ENSSSCG00000034782
ENSG00000131475
Vacuolar protein sorting 25 homolog
Low tissue specificity
Detected in all
VPS26A
ENSSSCG00000010250
ENSG00000122958
VPS26, retromer complex component A
Low tissue specificity
Detected in all
VPS28
ENSSSCG00000005904
ENSG00000160948
VPS28, ESCRT-I subunit
Low tissue specificity
Detected in all
VPS29
ENSSSCG00000009823
ENSG00000111237
VPS29, retromer complex component
Low tissue specificity
Detected in all
VPS35
ENSSSCG00000026239
ENSG00000069329
VPS35, retromer complex component
Low tissue specificity
Detected in all
VPS35L
ENSSSCG00000027324
ENSG00000103544
VPS35 endosomal protein sorting factor like
Low tissue specificity
Detected in all
VPS41
ENSSSCG00000016772
ENSG00000006715
VPS41, HOPS complex subunit
Low tissue specificity
Detected in all
VPS45
ENSSSCG00000006661
ENSG00000136631
Vacuolar protein sorting-associated protein 45
Low tissue specificity
Detected in all
VPS50
ENSSSCG00000022982
ENSG00000004766
VPS50, EARP/GARPII complex subunit
Tissue enhanced
Detected in all
brain:
47.6
VPS8
ENSSSCG00000011788
ENSG00000156931
VPS8, CORVET complex subunit
Low tissue specificity
Detected in all
VTA1
ENSSSCG00000004140
ENSG00000009844
Vesicle trafficking 1
Low tissue specificity
Detected in all
VTI1B
ENSSSCG00000002295
ENSG00000100568
Vesicle transport through interaction with t-SNAREs homolog 1B
Low tissue specificity
Detected in all
WASHC4
ENSSSCG00000000840
ENSG00000136051
WASH complex subunit 4
Low tissue specificity
Detected in all
WASHC5
ENSSSCG00000005969
ENSG00000164961
WASH complex subunit 5
Low tissue specificity
Detected in all
WBP11
ENSSSCG00000000611
ENSG00000084463
WW domain binding protein 11
Tissue enhanced
Detected in all
testis:
97.8
WDCP
ENSSSCG00000008589
ENSG00000163026
WD repeat and coiled coil containing
Low tissue specificity
Detected in all
WDR11
ENSSSCG00000010692
ENSG00000120008
WD repeat domain 11
Low tissue specificity
Detected in all
WDR12
ENSSSCG00000016116
ENSG00000138442
WD repeat domain 12
Low tissue specificity
Detected in all
WDR36
ENSSSCG00000014199
ENSG00000134987
WD repeat domain 36
Low tissue specificity
Detected in all
WDR41
ENSSSCG00000014098
ENSG00000164253
WD repeat domain 41
Low tissue specificity
Detected in all
WDR48
ENSSSCG00000011261
ENSG00000114742
WD repeat domain 48
Tissue enhanced
Detected in all
testis:
51.1
WDR61
ENSSSCG00000001757
ENSG00000140395
WD repeat domain 61
Tissue enhanced
Detected in all
lens:
45.0
WDR75
ENSSSCG00000016036
ENSG00000115368
WD repeat domain 75
Low tissue specificity
Detected in all
WDR77
ENSSSCG00000006790
ENSG00000116455
WD repeat domain 77
Low tissue specificity
Detected in all
WDR82
ENSSSCG00000011433
ENSG00000164091
WD repeat domain 82
Low tissue specificity
Detected in all
WDR92
ENSSSCG00000008353
ENSG00000243667
WD repeat domain 92
Low tissue specificity
Detected in all
XK
ENSSSCG00000031868
ENSG00000047597
X-linked Kx blood group
Low tissue specificity
Detected in many
XPA
ENSSSCG00000005368
ENSG00000136936
XPA, DNA damage recognition and repair factor
Low tissue specificity
Detected in all
XPO1
ENSSSCG00000028228
ENSG00000082898
Exportin 1
Low tissue specificity
Detected in all
XPO5
ENSSSCG00000001679
ENSG00000124571
Exportin 5
Low tissue specificity
Detected in all
XPO7
ENSSSCG00000009611
ENSG00000130227
Exportin 7
Low tissue specificity
Detected in all
XPOT
ENSSSCG00000000466
ENSG00000184575
Exportin for tRNA
Low tissue specificity
Detected in all
YARS2
ENSSSCG00000027429
ENSG00000139131
Tyrosyl-tRNA synthetase 2
Low tissue specificity
Detected in all
YEATS4
ENSSSCG00000037845
ENSG00000127337
YEATS domain containing 4
Low tissue specificity
Detected in all
YIPF1
ENSSSCG00000028506
ENSG00000058799
Yip1 domain family member 1
Low tissue specificity
Detected in all
YIPF4
ENSSSCG00000035747
ENSG00000119820
Yip1 domain family member 4
Low tissue specificity
Detected in all
YIPF5
ENSSSCG00000039309
ENSG00000145817
Protein YIPF5
Low tissue specificity
Detected in all
YIPF6
ENSSSCG00000028336
ENSG00000181704
Yip1 domain family member 6
Low tissue specificity
Detected in all
YME1L1
ENSSSCG00000011066
ENSG00000136758
YME1 like 1 ATPase
Low tissue specificity
Detected in all
YPEL5
ENSSSCG00000008529
ENSG00000119801
Yippee like 5
Low tissue specificity
Detected in all
YRDC
ENSSSCG00000040425
ENSG00000196449
YrdC N6-threonylcarbamoyltransferase domain containing
Low tissue specificity
Detected in all
YTHDC2
ENSSSCG00000014211
ENSG00000047188
YTH domain containing 2
Low tissue specificity
Detected in all
YTHDF2
ENSSSCG00000027686
ENSG00000198492
YTH N6-methyladenosine RNA binding protein 2
Low tissue specificity
Detected in all
YTHDF3
ENSSSCG00000033144
ENSG00000185728
YTH N6-methyladenosine RNA binding protein 3
Low tissue specificity
Detected in all
YWHAB
ENSSSCG00000007381
ENSG00000166913
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta
Low tissue specificity
Detected in all
YWHAE
ENSSSCG00000038989
ENSG00000108953
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon
Low tissue specificity
Detected in all
YWHAH
ENSSSCG00000010035
ENSG00000128245
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta
Tissue enhanced
Detected in all
brain:
69.9
lens:
98.4
pineal gland:
61.0
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