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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
UBE2M
ENSSSCG00000037734
ENSG00000130725
Ubiquitin conjugating enzyme E2 M
Low tissue specificity
Detected in all
UBE2Q1
ENSSSCG00000006544
ENSG00000160714
Ubiquitin conjugating enzyme E2 Q1
Low tissue specificity
Detected in all
UBE2V1
ENSSSCG00000030632
ENSG00000244687
Ubiquitin-conjugating enzyme E2 variant 1
Low tissue specificity
Detected in all
UBE2V2
ENSSSCG00000022190
ENSG00000169139
Ubiquitin-conjugating enzyme E2 variant 2
Low tissue specificity
Detected in all
UBE2W
ENSSSCG00000006177
ENSG00000104343
Ubiquitin-conjugating enzyme E2 W
Low tissue specificity
Detected in all
UBE3A
ENSSSCG00000004832
ENSG00000114062
Ubiquitin-protein ligase E3A isoform 1
Low tissue specificity
Detected in all
UBE4A
ENSSSCG00000015095
ENSG00000110344
Ubiquitin conjugation factor E4 A
Low tissue specificity
Detected in all
UBL3
ENSSSCG00000035992
ENSG00000122042
Ubiquitin like 3
Low tissue specificity
Detected in all
UBLCP1
ENSSSCG00000017042
ENSG00000164332
Ubiquitin like domain containing CTD phosphatase 1
Low tissue specificity
Detected in all
UBOX5
ENSSSCG00000007162
ENSG00000185019
U-box domain containing 5
Low tissue specificity
Detected in all
UBQLN1
ENSSSCG00000021005
ENSG00000135018
Ubiquilin 1
Low tissue specificity
Detected in all
UBQLN2
ENSSSCG00000035264
ENSG00000188021
Ubiquilin 2
Low tissue specificity
Detected in all
UBR3
ENSSSCG00000015940
ENSG00000144357
Ubiquitin protein ligase E3 component n-recognin 3 (putative)
Low tissue specificity
Detected in all
UBR7
ENSSSCG00000002460
ENSG00000012963
Ubiquitin protein ligase E3 component n-recognin 7 (putative)
Low tissue specificity
Detected in all
UBTD2
ENSSSCG00000023948
ENSG00000168246
Ubiquitin domain containing 2
Low tissue specificity
Detected in all
UBXN2A
ENSSSCG00000033753
ENSG00000173960
UBX domain protein 2A
Low tissue specificity
Detected in all
UBXN4
ENSSSCG00000015690
ENSG00000144224
UBX domain protein 4
Low tissue specificity
Detected in all
UBXN7
ENSSSCG00000021380
ENSG00000163960
UBX domain protein 7
Low tissue specificity
Detected in all
UCHL3
ENSSSCG00000009466
ENSG00000118939
Ubiquitin carboxyl-terminal hydrolase isozyme L3
Tissue enhanced
Detected in all
testis:
39.5
UCHL5
ENSSSCG00000010802
ENSG00000116750
Ubiquitin carboxyl-terminal hydrolase isozyme L5
Low tissue specificity
Detected in all
UEVLD
ENSSSCG00000013362
ENSG00000151116
UEV and lactate/malate dehyrogenase domains
Low tissue specificity
Detected in all
UFL1
ENSSSCG00000004339
ENSG00000014123
E3 UFM1-protein ligase 1
Low tissue specificity
Detected in all
UGCG
ENSSSCG00000022780
ENSG00000148154
UDP-glucose ceramide glucosyltransferase
Low tissue specificity
Detected in all
UHMK1
ENSSSCG00000006342
ENSG00000152332
U2AF homology motif kinase 1
Low tissue specificity
Detected in all
UHRF1BP1L
ENSSSCG00000026697
ENSG00000111647
UHRF1 binding protein 1 like
Low tissue specificity
Detected in all
UMAD1
ENSSSCG00000036169
ENSG00000219545
UBAP1-MVB12-associated (UMA) domain containing 1
Low tissue specificity
Detected in all
UMPS
ENSSSCG00000011864
ENSG00000114491
Uridine monophosphate synthetase
Low tissue specificity
Detected in all
UNC50
ENSSSCG00000025010
ENSG00000115446
Unc-50 inner nuclear membrane RNA binding protein
Low tissue specificity
Detected in all
UPRT
ENSSSCG00000012425
ENSG00000094841
Uracil phosphoribosyltransferase homolog
Low tissue specificity
Detected in all
URI1
ENSSSCG00000025912
ENSG00000105176
URI1, prefoldin like chaperone
Low tissue specificity
Detected in all
UROD
ENSSSCG00000003922
ENSG00000126088
Uroporphyrinogen decarboxylase
Low tissue specificity
Detected in all
USO1
ENSSSCG00000008971
ENSG00000138768
USO1 vesicle transport factor
Low tissue specificity
Detected in all
USP14
ENSSSCG00000022559
ENSG00000101557
Ubiquitin specific peptidase 14
Low tissue specificity
Detected in all
USP15
ENSSSCG00000000457
ENSG00000135655
Ubiquitin specific peptidase 15
Low tissue specificity
Detected in all
USP16
ENSSSCG00000027594
ENSG00000156256
Ubiquitin specific peptidase 16
Low tissue specificity
Detected in all
USP34
ENSSSCG00000008382
ENSG00000115464
Ubiquitin specific peptidase 34
Low tissue specificity
Detected in all
USP39
ENSSSCG00000030435
ENSG00000168883
Ubiquitin specific peptidase 39
Low tissue specificity
Detected in all
USP45
ENSSSCG00000004351
ENSG00000123552
Ubiquitin specific peptidase 45
Low tissue specificity
Detected in all
USP47
ENSSSCG00000013402
ENSG00000170242
Ubiquitin specific peptidase 47
Low tissue specificity
Detected in all
USP5
ENSSSCG00000000684
ENSG00000111667
Ubiquitin specific peptidase 5
Tissue enhanced
Detected in all
lens:
49.3
USP8
ENSSSCG00000004639
ENSG00000138592
Ubiquitin specific peptidase 8
Low tissue specificity
Detected in all
USP9X
ENSSSCG00000012251
ENSG00000124486
Ubiquitin specific peptidase 9, X-linked
Low tissue specificity
Detected in all
UTP11
ENSSSCG00000003645
ENSG00000183520
Probable U3 small nucleolar RNA-associated protein 11
Low tissue specificity
Detected in all
UTP15
ENSSSCG00000014068
ENSG00000164338
U3 small nucleolar RNA-associated protein 15 homolog
Low tissue specificity
Detected in all
UTP4
ENSSSCG00000028638
ENSG00000141076
UTP4, small subunit processome component
Low tissue specificity
Detected in all
UTP6
ENSSSCG00000017745
ENSG00000108651
UTP6, small subunit processome component
Tissue enhanced
Detected in all
cartilage:
59.4
UXT
ENSSSCG00000012280
ENSG00000126756
Ubiquitously expressed prefoldin like chaperone
Tissue enhanced
Detected in all
male glands:
42.0
VAMP4
ENSSSCG00000015482
ENSG00000117533
Vesicle-associated membrane protein 4
Low tissue specificity
Detected in all
VAMP7
ENSSSCG00000029615
ENSG00000124333
Vesicle-associated membrane protein 7
Low tissue specificity
Detected in all
VCPIP1
ENSSSCG00000006209
ENSG00000175073
Valosin containing protein interacting protein 1
Tissue enhanced
Detected in all
lens:
48.5
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