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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SRP14
ENSSSCG00000004785
ENSG00000140319
Signal recognition particle 14
Low tissue specificity
Detected in all
SRP19
ENSSSCG00000026230
ENSG00000153037
Signal recognition particle 19
Low tissue specificity
Detected in all
SRP54
ENSSSCG00000001955
ENSG00000100883
Signal recognition particle 54
Low tissue specificity
Detected in all
SRP72
ENSSSCG00000008900
ENSG00000174780
Signal recognition particle 72
Low tissue specificity
Detected in all
SRPRB
ENSSSCG00000011639
ENSG00000144867
SRP receptor beta subunit
Tissue enhanced
Detected in all
male glands:
55.0
SRXN1
ENSSSCG00000023298
ENSG00000271303
Sulfiredoxin 1
Tissue enhanced
Detected in many
ovary:
41.0
SSB
ENSSSCG00000015938
ENSG00000138385
Sjogren syndrome antigen B
Low tissue specificity
Detected in all
SSBP2
ENSSSCG00000035757
ENSG00000145687
Single stranded DNA binding protein 2
Low tissue specificity
Detected in all
SSR3
ENSSSCG00000030567
ENSG00000114850
Translocon-associated protein subunit gamma
Low tissue specificity
Detected in all
ST3GAL5
ENSSSCG00000008227
ENSG00000115525
ST3 beta-galactoside alpha-2,3-sialyltransferase 5
Low tissue specificity
Detected in all
STAG2
ENSSSCG00000012642
ENSG00000101972
Stromal antigen 2
Low tissue specificity
Detected in all
STAM2
ENSSSCG00000016399
ENSG00000115145
Signal transducing adaptor molecule 2
Low tissue specificity
Detected in all
STAMBP
ENSSSCG00000008300
ENSG00000124356
STAM binding protein
Low tissue specificity
Detected in all
STEAP2
ENSSSCG00000015302
ENSG00000157214
STEAP2 metalloreductase
Low tissue specificity
Detected in all
STIP1
ENSSSCG00000021620
ENSG00000168439
Stress induced phosphoprotein 1
Tissue enhanced
Detected in all
lens:
99.6
STK16
ENSSSCG00000016214
ENSG00000115661
Serine/threonine kinase 16
Low tissue specificity
Detected in all
STK39
ENSSSCG00000022496
ENSG00000198648
Serine/threonine kinase 39
Tissue enhanced
Detected in many
choroid plexus:
76.5
lens:
59.8
salivary gland:
59.5
STMN1
ENSSSCG00000026257
ENSG00000117632
Stathmin
Tissue enhanced
Detected in all
brain:
111.8
lymphoid tissue:
71.7
STRAP
ENSSSCG00000021410
ENSG00000023734
Serine/threonine kinase receptor associated protein
Low tissue specificity
Detected in all
STX7
ENSSSCG00000004190
ENSG00000079950
Syntaxin 7
Low tissue specificity
Detected in all
STX8
ENSSSCG00000034964
ENSG00000170310
Syntaxin 8
Low tissue specificity
Detected in all
STYX
ENSSSCG00000005039
ENSG00000198252
Serine/threonine/tyrosine interacting protein
Low tissue specificity
Detected in all
SUCO
ENSSSCG00000015485
ENSG00000094975
SUN domain containing ossification factor
Tissue enhanced
Detected in all
lens:
132.9
SUGT1
ENSSSCG00000039338
ENSG00000165416
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone
Tissue enhanced
Detected in all
brain:
29.2
SUMO1
ENSSSCG00000035842
ENSG00000116030
Small ubiquitin-related modifier 1
Low tissue specificity
Detected in all
SUMO2
ENSSSCG00000017212
ENSG00000188612
Small ubiquitin-related modifier 2
Low tissue specificity
Detected in all
SUMO3
ENSSSCG00000035795
ENSG00000184900
Small ubiquitin-like modifier 3
Low tissue specificity
Detected in all
SUPT16H
ENSSSCG00000022900
ENSG00000092201
SPT16 homolog, facilitates chromatin remodeling subunit
Low tissue specificity
Detected in all
SUPT7L
ENSSSCG00000008548
ENSG00000119760
SPT7 like, STAGA complex gamma subunit
Low tissue specificity
Detected in all
SUPV3L1
ENSSSCG00000010251
ENSG00000156502
Suv3 like RNA helicase
Low tissue specificity
Detected in all
SUZ12
ENSSSCG00000017744
ENSG00000178691
SUZ12 polycomb repressive complex 2 subunit
Low tissue specificity
Detected in all
SVIP
ENSSSCG00000039613
ENSG00000198168
Small VCP interacting protein
Tissue enhanced
Detected in many
brain:
19.1
lens:
22.3
pituitary gland:
25.2
SYAP1
ENSSSCG00000012148
ENSG00000169895
Synapse-associated protein 1 isoform 2
Low tissue specificity
Detected in all
SYF2
ENSSSCG00000037481
ENSG00000117614
SYF2 pre-mRNA splicing factor
Low tissue specificity
Detected in all
TADA1
ENSSSCG00000006318
ENSG00000152382
Transcriptional adaptor 1
Low tissue specificity
Detected in all
TADA2A
ENSSSCG00000025775
ENSG00000276234
Transcriptional adaptor 2A
Low tissue specificity
Detected in all
TAF11
ENSSSCG00000001533
ENSG00000064995
Transcription initiation factor TFIID subunit 11
Low tissue specificity
Detected in all
TAF12
ENSSSCG00000027530
ENSG00000120656
TATA-box binding protein associated factor 12
Low tissue specificity
Detected in all
TAF13
ENSSSCG00000020842
ENSG00000197780
Transcription initiation factor TFIID subunit 13
Low tissue specificity
Detected in all
TAF2
ENSSSCG00000006000
ENSG00000064313
TATA-box binding protein associated factor 2
Low tissue specificity
Detected in all
TAF4B
ENSSSCG00000003718
ENSG00000141384
TATA-box binding protein associated factor 4b
Low tissue specificity
Detected in all
TAF7
ENSSSCG00000028168
ENSG00000178913
TATA-box binding protein associated factor 7
Low tissue specificity
Detected in all
TAF9
ENSSSCG00000038615
ENSG00000273841
TATA-box binding protein associated factor 9
Low tissue specificity
Detected in all
TAF9B
ENSSSCG00000026714
ENSG00000187325
TATA-box binding protein associated factor 9b
Low tissue specificity
Detected in all
TAOK1
ENSSSCG00000017790
ENSG00000160551
TAO kinase 1
Low tissue specificity
Detected in all
TAPT1
ENSSSCG00000021828
ENSG00000169762
Transmembrane anterior posterior transformation 1
Low tissue specificity
Detected in all
TARS
ENSSSCG00000016817
ENSG00000113407
Threonyl-tRNA synthetase
Low tissue specificity
Detected in all
TATDN1
ENSSSCG00000030603
ENSG00000147687
Putative deoxyribonuclease TATDN1
Low tissue specificity
Detected in all
TAX1BP1
ENSSSCG00000016692
ENSG00000106052
Tax1 binding protein 1
Low tissue specificity
Detected in all
TBC1D15
ENSSSCG00000000512
ENSG00000121749
TBC1 domain family member 15
Low tissue specificity
Detected in all
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