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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SENP6
ENSSSCG00000020702
ENSG00000112701
SUMO1/sentrin specific peptidase 6
Low tissue specificity
Detected in all
SENP7
ENSSSCG00000021791
ENSG00000138468
SUMO1/sentrin specific peptidase 7
Low tissue specificity
Detected in all
SENP8
ENSSSCG00000025616
ENSG00000166192
SUMO/sentrin peptidase family member, NEDD8 specific
Low tissue specificity
Detected in all
SEPT7
ENSSSCG00000016661
ENSG00000122545
Septin 7
Tissue enhanced
Detected in all
brain:
111.0
SERINC1
ENSSSCG00000004237
ENSG00000111897
Serine incorporator 1
Low tissue specificity
Detected in all
SERINC3
ENSSSCG00000039591
ENSG00000132824
Serine incorporator 3
Low tissue specificity
Detected in all
SESN3
ENSSSCG00000037015
ENSG00000149212
Sestrin 3
Tissue enriched
Detected in all
lens:
145.8
SF3B5
ENSSSCG00000035578
ENSG00000169976
Splicing factor 3b subunit 5
Low tissue specificity
Detected in all
SF3B6
ENSSSCG00000008587
ENSG00000115128
Splicing factor 3b subunit 6
Low tissue specificity
Detected in all
SFT2D1
ENSSSCG00000004020
ENSG00000198818
Vesicle transport protein SFT2A
Low tissue specificity
Detected in all
SFXN1
ENSSSCG00000014063
ENSG00000164466
Sideroflexin-1
Low tissue specificity
Detected in all
SGPP1
ENSSSCG00000028558
ENSG00000126821
Sphingosine-1-phosphate phosphatase 1
Low tissue specificity
Detected in all
SH3BGRL
ENSSSCG00000012452
ENSG00000131171
SH3 domain binding glutamate rich protein like
Low tissue specificity
Detected in all
SH3BGRL3
ENSSSCG00000034937
ENSG00000142669
SH3 domain binding glutamate rich protein like 3
Low tissue specificity
Detected in all
SHOC2
ENSSSCG00000010628
ENSG00000108061
SHOC2, leucine rich repeat scaffold protein
Low tissue specificity
Detected in all
SHQ1
ENSSSCG00000011518
ENSG00000144736
SHQ1, H/ACA ribonucleoprotein assembly factor
Low tissue specificity
Detected in all
SKA2
ENSSSCG00000034217
ENSG00000182628
Spindle and kinetochore associated complex subunit 2
Low tissue specificity
Detected in all
SKIL
ENSSSCG00000011746
ENSG00000136603
SKI like proto-oncogene
Low tissue specificity
Detected in all
SLC12A2
ENSSSCG00000014255
ENSG00000064651
Solute carrier family 12 member 2
Tissue enriched
Detected in many
male glands:
217.5
SLC17A5
ENSSSCG00000004486
ENSG00000119899
Solute carrier family 17 member 5
Low tissue specificity
Detected in all
SLC18A2
ENSSSCG00000020671
ENSG00000165646
Synaptic vesicular amine transporter
Tissue enriched
Detected in many
brain:
65.9
SLC25A16
ENSSSCG00000022303
ENSG00000122912
Solute carrier family 25 member 16
Low tissue specificity
Detected in all
SLC25A32
ENSSSCG00000006049
ENSG00000164933
Solute carrier family 25 member 32
Low tissue specificity
Detected in all
SLC25A36
ENSSSCG00000036855
ENSG00000114120
Solute carrier family 25 member 36
Low tissue specificity
Detected in all
SLC25A40
ENSSSCG00000026177
ENSG00000075303
Solute carrier family 25 member 40
Low tissue specificity
Detected in all
SLC25A44
ENSSSCG00000006494
ENSG00000160785
Solute carrier family 25 member 44
Low tissue specificity
Detected in all
SLC25A46
ENSSSCG00000014197
ENSG00000164209
Solute carrier family 25 member 46
Low tissue specificity
Detected in all
SLC25A5
ENSSSCG00000012623
ENSG00000005022
Solute carrier family 25 member 5
Tissue enhanced
Detected in all
large intestine:
65.1
SLC2A13
ENSSSCG00000000783
ENSG00000151229
Solute carrier family 2 member 13
Tissue enhanced
Detected in many
brain:
24.0
SLC30A1
ENSSSCG00000039472
ENSG00000170385
Zinc transporter 1
Tissue enhanced
Detected in all
choroid plexus:
35.7
SLC30A5
ENSSSCG00000022430
ENSG00000145740
Zinc transporter 5
Tissue enhanced
Detected in all
ovary:
64.6
SLC30A6
ENSSSCG00000008518
ENSG00000152683
Zinc transporter 6
Low tissue specificity
Detected in all
SLC30A9
ENSSSCG00000008801
ENSG00000014824
Zinc transporter 9
Low tissue specificity
Detected in all
SLC35A5
ENSSSCG00000011929
ENSG00000138459
Solute carrier family 35 member A5
Low tissue specificity
Detected in all
SLC35E1
ENSSSCG00000013861
ENSG00000127526
Solute carrier family 35 member E1
Low tissue specificity
Detected in all
SLC35E3
ENSSSCG00000000487
ENSG00000175782
Solute carrier family 35 member E3
Low tissue specificity
Detected in all
SLC36A4
ENSSSCG00000024933
ENSG00000180773
Solute carrier family 36 member 4
Low tissue specificity
Detected in all
SLC38A5
ENSSSCG00000025981
ENSG00000017483
Sodium-coupled neutral amino acid transporter 5
Tissue enhanced
Detected in all
lens:
33.0
SLC39A6
ENSSSCG00000027455
ENSG00000141424
Solute carrier family 39 member 6
Low tissue specificity
Detected in all
SLC39A7
ENSSSCG00000001475
ENSG00000112473
Zinc transporter SLC39A7 precursor
Tissue enhanced
Detected in all
male glands:
99.4
SLC39A9
ENSSSCG00000028600
ENSG00000029364
Solute carrier family 39 member 9
Low tissue specificity
Detected in all
SLC3A2
ENSSSCG00000022404
ENSG00000168003
Solute carrier family 3 member 2
Low tissue specificity
Detected in all
SLC41A2
ENSSSCG00000000838
ENSG00000136052
Solute carrier family 41 member 2
Tissue enhanced
Detected in all
male glands:
41.9
SLC4A1AP
ENSSSCG00000008549
ENSG00000163798
Solute carrier family 4 member 1 adaptor protein
Low tissue specificity
Detected in all
SLC50A1
ENSSSCG00000006529
ENSG00000169241
Solute carrier family 50 member 1
Tissue enhanced
Detected in all
male glands:
48.7
SLC7A6OS
ENSSSCG00000033167
ENSG00000103061
Solute carrier family 7 member 6 opposite strand
Low tissue specificity
Detected in all
SLF1
ENSSSCG00000014163
ENSG00000133302
SMC5-SMC6 complex localization factor 1
Tissue enhanced
Detected in all
epididymis:
29.6
SLU7
ENSSSCG00000017033
ENSG00000164609
SLU7 homolog, splicing factor
Low tissue specificity
Detected in all
SMAP1
ENSSSCG00000004276
ENSG00000112305
Small ArfGAP 1
Low tissue specificity
Detected in all
SMARCA5
ENSSSCG00000009047
ENSG00000153147
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Low tissue specificity
Detected in all
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