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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RRN3
ENSSSCG00000033356
ENSG00000085721
RRN3 homolog, RNA polymerase I transcription factor
Low tissue specificity
Detected in all
RRP15
ENSSSCG00000027846
ENSG00000067533
Ribosomal RNA processing 15 homolog
Low tissue specificity
Detected in all
RRP36
ENSSSCG00000001656
ENSG00000124541
Ribosomal RNA processing protein 36 homolog
Low tissue specificity
Detected in all
RSF1
ENSSSCG00000014882
ENSG00000048649
Remodeling and spacing factor 1
Low tissue specificity
Detected in all
RSL1D1
ENSSSCG00000023984
ENSG00000171490
Ribosomal L1 domain containing 1
Low tissue specificity
Detected in all
RSPRY1
ENSSSCG00000002820
ENSG00000159579
Ring finger and SPRY domain containing 1
Low tissue specificity
Detected in all
RTCA
ENSSSCG00000006865
ENSG00000137996
RNA 3'-terminal phosphate cyclase
Tissue enhanced
Detected in all
lens:
49.9
RTCB
ENSSSCG00000000158
ENSG00000100220
TRNA-splicing ligase RtcB homolog
Low tissue specificity
Detected in all
RTF1
ENSSSCG00000004747
ENSG00000137815
RTF1 homolog, Paf1/RNA polymerase II complex component
Low tissue specificity
Detected in all
RTF2
ENSSSCG00000007496
ENSG00000022277
Protein RTF2 homolog
Low tissue specificity
Detected in all
RTKN2
ENSSSCG00000039707
ENSG00000182010
Rhotekin 2
Tissue enhanced
Detected in many
lung:
27.1
lymphoid tissue:
22.1
testis:
13.9
RUFY1
ENSSSCG00000014023
ENSG00000176783
RUN and FYVE domain containing 1
Low tissue specificity
Detected in all
RUVBL1
ENSSSCG00000011620
ENSG00000175792
RuvB like AAA ATPase 1
Tissue enhanced
Detected in all
testis:
58.9
RWDD1
ENSSSCG00000004446
ENSG00000111832
RWD domain containing 1
Low tissue specificity
Detected in all
RWDD2B
ENSSSCG00000040459
ENSG00000156253
RWD domain containing 2B
Tissue enhanced
Detected in all
lens:
27.1
RXYLT1
ENSSSCG00000000462
ENSG00000118600
Ribitol xylosyltransferase 1
Tissue enhanced
Detected in all
testis:
41.0
RYBP
ENSSSCG00000025053
ENSG00000163602
RING1 and YY1 binding protein
Low tissue specificity
Detected in all
RYK
ENSSSCG00000011642
ENSG00000163785
Receptor-like tyrosine kinase
Low tissue specificity
Detected in all
S100PBP
ENSSSCG00000022801
ENSG00000116497
S100P binding protein
Tissue enhanced
Detected in all
testis:
56.8
SACM1L
ENSSSCG00000027176
ENSG00000211456
SAC1 like phosphatidylinositide phosphatase
Low tissue specificity
Detected in all
SAE1
ENSSSCG00000003111
ENSG00000142230
SUMO1 activating enzyme subunit 1
Low tissue specificity
Detected in all
SAMD8
ENSSSCG00000010319
ENSG00000156671
Sterile alpha motif domain containing 8
Low tissue specificity
Detected in all
SAR1A
ENSSSCG00000010260
ENSG00000079332
GTP-binding protein SAR1a
Tissue enhanced
Detected in all
male glands:
82.8
SARAF
ENSSSCG00000033402
ENSG00000133872
Store-operated calcium entry associated regulatory factor
Tissue enhanced
Detected in all
male glands:
57.9
SARNP
ENSSSCG00000000364
ENSG00000205323
SAP domain containing ribonucleoprotein
Low tissue specificity
Detected in all
SARS
ENSSSCG00000006835
ENSG00000031698
Seryl-tRNA synthetase
Low tissue specificity
Detected in all
SBNO1
ENSSSCG00000009776
ENSG00000139697
Strawberry notch homolog 1
Low tissue specificity
Detected in all
SC5D
ENSSSCG00000028517
ENSG00000109929
Sterol-C5-desaturase
Tissue enhanced
Detected in all
brain:
42.8
liver:
49.5
male glands:
37.0
SCAMP1
ENSSSCG00000034795
ENSG00000085365
Secretory carrier-associated membrane protein 1
Tissue enhanced
Detected in all
pineal gland:
37.8
SCARB2
ENSSSCG00000008980
ENSG00000138760
Lysosome membrane protein 2 precursor
Low tissue specificity
Detected in all
SCCPDH
ENSSSCG00000010866
ENSG00000143653
Saccharopine dehydrogenase-like oxidoreductase
Low tissue specificity
Detected in all
SCFD1
ENSSSCG00000001973
ENSG00000092108
Sec1 family domain containing 1
Low tissue specificity
Detected in all
SCRN3
ENSSSCG00000023297
ENSG00000144306
Secernin 3
Low tissue specificity
Detected in all
SCYL2
ENSSSCG00000000877
ENSG00000136021
SCY1 like pseudokinase 2
Low tissue specificity
Detected in all
SDCBP
ENSSSCG00000006237
ENSG00000137575
Syntenin-1 CG9291-PB
Low tissue specificity
Detected in all
SDF2
ENSSSCG00000017772
ENSG00000132581
Stromal cell derived factor 2
Low tissue specificity
Detected in all
SEC11C
ENSSSCG00000004912
ENSG00000166562
SEC11 homolog C, signal peptidase complex subunit
Low tissue specificity
Detected in all
SEC22A
ENSSSCG00000024904
ENSG00000121542
SEC22 homolog A, vesicle trafficking protein
Low tissue specificity
Detected in all
SEC22C
ENSSSCG00000034200
ENSG00000093183
Vesicle-trafficking protein SEC22c
Low tissue specificity
Detected in all
SEC23B
ENSSSCG00000007097
ENSG00000101310
Protein transport protein Sec23B
Low tissue specificity
Detected in all
SEC62
ENSSSCG00000029608
ENSG00000008952
Translocation protein SEC62
Tissue enhanced
Detected in all
lens:
60.7
male glands:
57.5
SEC63
ENSSSCG00000004382
ENSG00000025796
SEC63 homolog, protein translocation regulator
Low tissue specificity
Detected in all
SEL1L
ENSSSCG00000002414
ENSG00000071537
SEL1L ERAD E3 ligase adaptor subunit
Low tissue specificity
Detected in all
SELENOF
ENSSSCG00000030125
ENSG00000183291
Selenoprotein F
Tissue enhanced
Detected in all
male glands:
86.0
SELENOH
ENSSSCG00000032364
ENSG00000211450
Selenoprotein H
Low tissue specificity
Detected in all
SELENOI
ENSSSCG00000030643
ENSG00000138018
Ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
Low tissue specificity
Detected in all
SELENOT
ENSSSCG00000036920
Selenoprotein T precursor
Low tissue specificity
Detected in all
SELENOW
ENSSSCG00000034313
ENSG00000178980
Selenoprotein W
Tissue enhanced
Detected in all
brain:
189.9
choroid plexus:
178.7
lens:
371.9
pineal gland:
187.7
SENP2
ENSSSCG00000011794
ENSG00000163904
SUMO1/sentrin/SMT3 specific peptidase 2
Low tissue specificity
Detected in all
SENP5
ENSSSCG00000011841
ENSG00000119231
SUMO1/sentrin specific peptidase 5
Low tissue specificity
Detected in all
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