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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RBX1
ENSSSCG00000034230
ENSG00000100387
Ring-box 1
Tissue enhanced
Detected in all
brain:
57.6
RC3H2
ENSSSCG00000005575
ENSG00000056586
Ring finger and CCCH-type domains 2
Low tissue specificity
Detected in all
RCHY1
ENSSSCG00000008969
ENSG00000163743
RING finger and CHY zinc finger domain-containing protein 1
Low tissue specificity
Detected in all
RCN2
ENSSSCG00000001866
ENSG00000117906
Reticulocalbin-2 precursor
Low tissue specificity
Detected in all
REEP5
ENSSSCG00000022048
ENSG00000129625
Receptor accessory protein 5
Tissue enhanced
Detected in all
male glands:
120.6
REPS1
ENSSSCG00000004146
ENSG00000135597
RALBP1 associated Eps domain containing 1
Low tissue specificity
Detected in all
RETREG3
ENSSSCG00000017395
ENSG00000141699
Reticulophagy regulator family member 3
Low tissue specificity
Detected in all
RFC2
ENSSSCG00000028504
ENSG00000049541
Replication factor C subunit 2
Low tissue specificity
Detected in all
RFC3
ENSSSCG00000009349
ENSG00000133119
Replication factor C subunit 3
Low tissue specificity
Detected in all
RFESD
ENSSSCG00000014141
ENSG00000175449
Rieske Fe-S domain containing
Tissue enhanced
Detected in all
lens:
38.8
RFK
ENSSSCG00000037277
ENSG00000135002
Riboflavin kinase
Tissue enhanced
Detected in all
male glands:
81.3
RHNO1
ENSSSCG00000000738
ENSG00000171792
RAD9-HUS1-RAD1 interacting nuclear orphan 1
Low tissue specificity
Detected in all
RHOA
ENSSSCG00000022080
ENSG00000067560
Transforming protein RhoA
Low tissue specificity
Detected in all
RIDA
ENSSSCG00000006079
ENSG00000132541
Reactive intermediate imine deaminase A homolog
Low tissue specificity
Detected in all
RIF1
ENSSSCG00000016395
ENSG00000080345
Replication timing regulatory factor 1
Low tissue specificity
Detected in all
RLF
ENSSSCG00000003670
ENSG00000117000
Rearranged L-myc fusion
Low tissue specificity
Detected in all
RLIM
ENSSSCG00000028538
ENSG00000131263
Ring finger protein, LIM domain interacting
Low tissue specificity
Detected in all
RMDN1
ENSSSCG00000006136
ENSG00000176623
Regulator of microtubule dynamics 1
Low tissue specificity
Detected in all
RMDN3
ENSSSCG00000004765
ENSG00000137824
Regulator of microtubule dynamics 3
Low tissue specificity
Detected in all
RMND1
ENSSSCG00000004089
ENSG00000155906
Required for meiotic nuclear division 1 homolog
Tissue enhanced
Detected in all
lens:
36.1
RNASEK
ENSSSCG00000017929
ENSG00000219200
Ribonuclease K
Tissue enhanced
Detected in all
pineal gland:
94.3
RNF115
ENSSSCG00000037355
ENSG00000265491
Ring finger protein 115
Low tissue specificity
Detected in all
RNF13
ENSSSCG00000027459
ENSG00000082996
Ring finger protein 13
Tissue enhanced
Detected in all
brain:
76.9
RNF138
ENSSSCG00000003730
ENSG00000134758
Ring finger protein 138
Tissue enhanced
Detected in all
testis:
58.7
RNF139
ENSSSCG00000024412
ENSG00000170881
Ring finger protein 139
Low tissue specificity
Detected in all
RNF141
ENSSSCG00000036546
ENSG00000110315
RING finger protein 141
Tissue enhanced
Detected in all
lens:
62.1
RNF145
ENSSSCG00000017043
ENSG00000145860
Ring finger protein 145
Tissue enhanced
Detected in all
lens:
71.7
RNF146
ENSSSCG00000004217
ENSG00000118518
Ring finger protein 146
Tissue enhanced
Detected in all
brain:
51.2
RNF170
ENSSSCG00000036001
ENSG00000120925
Ring finger protein 170
Low tissue specificity
Detected in all
RNF2
ENSSSCG00000015568
ENSG00000121481
Ring finger protein 2
Low tissue specificity
Detected in all
RNF219
ENSSSCG00000029113
ENSG00000152193
Ring finger protein 219
Low tissue specificity
Detected in all
RNF41
ENSSSCG00000000383
ENSG00000181852
Ring finger protein 41
Low tissue specificity
Detected in all
RNF7
ENSSSCG00000029774
ENSG00000114125
RING-box protein 2
Low tissue specificity
Detected in all
RNLS
ENSSSCG00000023141
ENSG00000184719
Renalase, FAD dependent amine oxidase
Low tissue specificity
Detected in all
RNMT
ENSSSCG00000025855
ENSG00000101654
RNA guanine-7 methyltransferase
Low tissue specificity
Detected in all
RPA1
ENSSSCG00000017822
ENSG00000132383
Replication protein A1
Low tissue specificity
Detected in all
RPA2
ENSSSCG00000003583
ENSG00000117748
Replication protein A 32 kDa subunit
Low tissue specificity
Detected in all
RPAP3
ENSSSCG00000021166
ENSG00000005175
RNA polymerase II associated protein 3
Low tissue specificity
Detected in all
RPF2
ENSSSCG00000004394
ENSG00000197498
Ribosome production factor 2 homolog
Low tissue specificity
Detected in all
RPL26L1
ENSSSCG00000016989
ENSG00000037241
60S ribosomal protein L26-like 1
Low tissue specificity
Detected in all
RPL36AL
ENSSSCG00000005006
60S ribosomal protein L36a
Tissue enhanced
Detected in all
male glands:
111.2
RPL7L1
ENSSSCG00000026472
ENSG00000146223
60S ribosomal protein L7-like 1
Low tissue specificity
Detected in all
RPP38
ENSSSCG00000027110
ENSG00000152464
Ribonuclease P protein subunit p38
Low tissue specificity
Detected in all
RPS21
ENSSSCG00000021825
ENSG00000171858
40S ribosomal protein S21
Tissue enhanced
Detected in all
lens:
89.9
RPS27L
ENSSSCG00000023158
ENSG00000185088
Ribosomal protein S27 like
Low tissue specificity
Detected in all
RPS29
ENSSSCG00000038507
ENSG00000213741
Ribosomal protein S29
Tissue enhanced
Detected in all
lens:
291.8
RPS6KC1
ENSSSCG00000015586
ENSG00000136643
Ribosomal protein S6 kinase C1
Low tissue specificity
Detected in all
RRAGA
ENSSSCG00000005174
ENSG00000155876
Ras related GTP binding A
Low tissue specificity
Detected in all
RRAGC
ENSSSCG00000003648
ENSG00000116954
C-Myc-binding protein
Low tissue specificity
Detected in all
RRAGD
ENSSSCG00000004318
ENSG00000025039
Ras-related GTP-binding protein D
Tissue enhanced
Detected in many
male glands:
34.4
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