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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PTRH2
ENSSSCG00000017667
ENSG00000141378
Peptidyl-tRNA hydrolase 2
Tissue enhanced
Detected in many
lens:
16.3
PUS3
ENSSSCG00000015222
ENSG00000110060
TRNA pseudouridine(38/39) synthase
Low tissue specificity
Detected in all
PUS7L
ENSSSCG00000000800
ENSG00000129317
Pseudouridylate synthase 7 like
Low tissue specificity
Detected in all
PWP1
ENSSSCG00000000161
ENSG00000136045
PWP1 homolog, endonuclein
Low tissue specificity
Detected in all
PYROXD1
ENSSSCG00000000583
ENSG00000121350
Pyridine nucleotide-disulphide oxidoreductase domain 1
Low tissue specificity
Detected in all
RAB10
ENSSSCG00000008573
ENSG00000084733
Ras-related protein Rab-10
Low tissue specificity
Detected in all
RAB11A
ENSSSCG00000032312
ENSG00000103769
Ras-related protein Rab-11A
Low tissue specificity
Detected in all
RAB14
ENSSSCG00000005514
ENSG00000119396
Ras-related protein Rab-14
Low tissue specificity
Detected in all
RAB18
ENSSSCG00000028655
ENSG00000099246
RAB18, member RAS oncogene family
Low tissue specificity
Detected in all
RAB1A
ENSSSCG00000008359
ENSG00000138069
Ras-related protein Rab-1A
Low tissue specificity
Detected in all
RAB21
ENSSSCG00000032468
ENSG00000080371
RAB21, member RAS oncogene family
Low tissue specificity
Detected in all
RAB22A
ENSSSCG00000007513
ENSG00000124209
Ras-related protein Rab-22A
Low tissue specificity
Detected in all
RAB2A
ENSSSCG00000006232
ENSG00000104388
RAB2A, member RAS oncogene family
Low tissue specificity
Detected in all
RAB2B
ENSSSCG00000029544
ENSG00000129472
RAB2B, member RAS oncogene family
Low tissue specificity
Detected in all
RAB33B
ENSSSCG00000020711
ENSG00000172007
RAB33B, member RAS oncogene family
Low tissue specificity
Detected in all
RAB35
ENSSSCG00000033876
ENSG00000111737
Ras-related protein Rab-35
Low tissue specificity
Detected in all
RAB3GAP1
ENSSSCG00000015695
ENSG00000115839
RAB3 GTPase activating protein catalytic subunit 1
Low tissue specificity
Detected in all
RAB4A
ENSSSCG00000036039
ENSG00000168118
RAB4A, member RAS oncogene family
Low tissue specificity
Detected in all
RAB5A
ENSSSCG00000037653
ENSG00000144566
Ras-related protein Rab-5A
Low tissue specificity
Detected in all
RAB5B
ENSSSCG00000037597
ENSG00000111540
RAB5B, member RAS oncogene family
Low tissue specificity
Detected in all
RABEP1
ENSSSCG00000017895
ENSG00000029725
Rabaptin, RAB GTPase binding effector protein 1
Low tissue specificity
Detected in all
RABEPK
ENSSSCG00000005599
ENSG00000136933
Rab9 effector protein with kelch motifs
Low tissue specificity
Detected in all
RABGAP1
ENSSSCG00000020743
ENSG00000011454
RAB GTPase activating protein 1
Low tissue specificity
Detected in all
RABL3
ENSSSCG00000035258
ENSG00000144840
RAB, member of RAS oncogene family like 3
Low tissue specificity
Detected in all
RAD17
ENSSSCG00000016960
ENSG00000152942
RAD17 checkpoint clamp loader component
Low tissue specificity
Detected in all
RAD18
ENSSSCG00000026158
ENSG00000070950
E3 ubiquitin-protein ligase RAD18
Tissue enhanced
Detected in all
testis:
39.9
RAD21
ENSSSCG00000006014
ENSG00000164754
RAD21 cohesin complex component
Low tissue specificity
Detected in all
RAD51C
ENSSSCG00000023955
ENSG00000108384
RAD51 paralog C
Low tissue specificity
Detected in all
RAD51D
ENSSSCG00000026989
ENSG00000185379
RAD51 paralog D
Low tissue specificity
Detected in all
RALA
ENSSSCG00000029741
ENSG00000006451
RAS like proto-oncogene A
Low tissue specificity
Detected in all
RALGAPB
ENSSSCG00000007345
ENSG00000170471
Ral GTPase activating protein non-catalytic beta subunit
Tissue enhanced
Detected in all
male glands:
77.9
RANBP1
ENSSSCG00000038308
ENSG00000099901
Ran-specific GTPase-activating protein
Tissue enhanced
Detected in all
testis:
130.3
RANBP17
ENSSSCG00000017000
ENSG00000204764
RAN binding protein 17
Low tissue specificity
Detected in all
RANBP6
ENSSSCG00000005204
ENSG00000137040
RAN binding protein 6
Low tissue specificity
Detected in all
RANBP9
ENSSSCG00000001056
ENSG00000010017
RAN binding protein 9
Low tissue specificity
Detected in all
RAP1A
ENSSSCG00000006785
ENSG00000116473
RAP1A, member of RAS oncogene family
Low tissue specificity
Detected in all
RAP1B
ENSSSCG00000032595
ENSG00000127314
RAP1B, member of RAS oncogene family
Low tissue specificity
Detected in all
RAP2C
ENSSSCG00000026301
ENSG00000123728
RAP2C, member of RAS oncogene family
Low tissue specificity
Detected in all
RARS
ENSSSCG00000017015
ENSG00000113643
Arginine--tRNA ligase, cytoplasmic
Low tissue specificity
Detected in all
RASA1
ENSSSCG00000014146
ENSG00000145715
RAS p21 protein activator 1
Low tissue specificity
Detected in all
RB1
ENSSSCG00000009401
ENSG00000139687
Retinoblastoma-associated protein
Low tissue specificity
Detected in all
RBBP4
ENSSSCG00000028423
ENSG00000162521
RB binding protein 4, chromatin remodeling factor
Low tissue specificity
Detected in all
RBBP5
ENSSSCG00000015288
ENSG00000117222
RB binding protein 5, histone lysine methyltransferase complex subunit
Low tissue specificity
Detected in all
RBBP9
ENSSSCG00000029494
ENSG00000089050
RB binding protein 9, serine hydrolase
Tissue enhanced
Detected in all
choroid plexus:
40.2
RBM12
ENSSSCG00000036156
ENSG00000244462
RNA binding motif protein 12
Low tissue specificity
Detected in all
RBM18
ENSSSCG00000030089
ENSG00000119446
RNA binding motif protein 18
Low tissue specificity
Detected in all
RBM48
ENSSSCG00000015315
ENSG00000127993
RNA binding motif protein 48
Low tissue specificity
Detected in all
RBM4B
ENSSSCG00000038304
ENSG00000173914
RNA-binding protein 4B
Low tissue specificity
Detected in all
RBM6
ENSSSCG00000011394
ENSG00000004534
RNA binding motif protein 6
Low tissue specificity
Detected in all
RBM8A
ENSSSCG00000028509
ENSG00000265241
RNA binding motif protein 8A
Low tissue specificity
Detected in all
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