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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PPP4R2
ENSSSCG00000037216
ENSG00000163605
Protein phosphatase 4 regulatory subunit 2
Low tissue specificity
Detected in all
PPP6C
ENSSSCG00000005600
ENSG00000119414
Serine/threonine-protein phosphatase 6 catalytic subunit
Low tissue specificity
Detected in all
PPT1
ENSSSCG00000036673
ENSG00000131238
Palmitoyl-protein thioesterase 1
Low tissue specificity
Detected in all
PPWD1
ENSSSCG00000016945
ENSG00000113593
Peptidylprolyl isomerase domain and WD repeat-containing protein 1
Low tissue specificity
Detected in all
PRDX5
ENSSSCG00000013030
ENSG00000126432
Peroxiredoxin-5, mitochondrial
Tissue enhanced
Detected in all
male glands:
87.6
PREPL
ENSSSCG00000008448
ENSG00000138078
Prolyl endopeptidase like
Tissue enhanced
Detected in all
brain:
49.8
pineal gland:
44.1
pituitary gland:
33.0
PRIM1
ENSSSCG00000026055
ENSG00000198056
DNA primase small subunit
Low tissue specificity
Detected in all
PRKAA1
ENSSSCG00000024598
ENSG00000132356
5'-AMP-activated protein kinase catalytic subunit alpha-1
Low tissue specificity
Detected in all
PRKACB
ENSSSCG00000040920
ENSG00000142875
Protein kinase cAMP-activated catalytic subunit beta
Tissue enhanced
Detected in many
brain:
48.5
pineal gland:
34.0
PRKAR1A
ENSSSCG00000017259
ENSG00000108946
CAMP-dependent protein kinase type I-alpha regulatory subunit
Low tissue specificity
Detected in all
PRKCSH
ENSSSCG00000013627
ENSG00000130175
Glucosidase 2 subunit beta precursor
Low tissue specificity
Detected in all
PRMT3
ENSSSCG00000013347
ENSG00000185238
Protein arginine methyltransferase 3
Low tissue specificity
Detected in all
PRMT5
ENSSSCG00000030045
ENSG00000100462
Protein arginine N-methyltransferase 5
Low tissue specificity
Detected in all
PRMT6
ENSSSCG00000006853
ENSG00000198890
Protein arginine N-methyltransferase 6
Low tissue specificity
Detected in all
PRMT9
ENSSSCG00000009030
ENSG00000164169
Protein arginine methyltransferase 9
Low tissue specificity
Detected in all
PRNP
ENSSSCG00000007039
ENSG00000171867
Prion protein
Low tissue specificity
Detected in all
PRPF19
ENSSSCG00000013107
ENSG00000110107
Pre-mRNA-processing factor 19
Low tissue specificity
Detected in all
PRPF40A
ENSSSCG00000015867
ENSG00000196504
Pre-mRNA-processing factor 40 homolog A
Low tissue specificity
Detected in all
PSAP
ENSSSCG00000010281
ENSG00000197746
Saposin-B-Val precursor
Tissue enhanced
Detected in all
choroid plexus:
224.0
PSEN1
ENSSSCG00000002340
ENSG00000080815
Presenilin-1
Low tissue specificity
Detected in all
PSMA3
ENSSSCG00000005072
ENSG00000100567
Proteasome subunit alpha 3
Low tissue specificity
Detected in all
PSMA4
ENSSSCG00000036924
ENSG00000041357
Proteasome subunit alpha type-4
Low tissue specificity
Detected in all
PSMA6
ENSSSCG00000001951
ENSG00000100902
Proteasome subunit alpha type-6
Low tissue specificity
Detected in all
PSMB1
ENSSSCG00000027257
ENSG00000008018
Proteasome subunit beta type-1
Tissue enhanced
Detected in all
lens:
108.0
PSMB2
ENSSSCG00000035914
ENSG00000126067
Proteasome subunit beta 2
Tissue enhanced
Detected in all
lens:
56.7
PSMB3
ENSSSCG00000037606
ENSG00000277791
Proteasome subunit beta type-3
Low tissue specificity
Detected in all
PSMB4
ENSSSCG00000034984
ENSG00000159377
Proteasome subunit beta type-4
Low tissue specificity
Detected in all
PSMC1
ENSSSCG00000002433
ENSG00000100764
26S protease regulatory subunit 4
Low tissue specificity
Detected in all
PSMC2
ENSSSCG00000015424
ENSG00000161057
26S protease regulatory subunit 7
Low tissue specificity
Detected in all
PSMC4
ENSSSCG00000039235
ENSG00000013275
Proteasome 26S subunit, ATPase 4
Low tissue specificity
Detected in all
PSMC6
ENSSSCG00000005038
ENSG00000100519
Proteasome 26S subunit, ATPase 6
Low tissue specificity
Detected in all
PSMD1
ENSSSCG00000016272
ENSG00000173692
Proteasome 26S subunit, non-ATPase 1
Low tissue specificity
Detected in all
PSMD10
ENSSSCG00000033180
ENSG00000101843
Proteasome 26S subunit, non-ATPase 10
Low tissue specificity
Detected in all
PSMD11
ENSSSCG00000017731
ENSG00000108671
Proteasome 26S subunit, non-ATPase 11
Tissue enhanced
Detected in all
lens:
94.3
PSMD12
ENSSSCG00000017273
ENSG00000197170
Proteasome 26S subunit, non-ATPase 12
Tissue enhanced
Detected in all
lens:
50.4
PSMD14
ENSSSCG00000015892
ENSG00000115233
Proteasome 26S subunit, non-ATPase 14
Tissue enhanced
Detected in all
lens:
56.2
PSMD5
ENSSSCG00000005507
ENSG00000095261
Proteasome 26S subunit, non-ATPase 5
Low tissue specificity
Detected in all
PSMD6
ENSSSCG00000011494
ENSG00000163636
Proteasome 26S subunit, non-ATPase 6
Tissue enhanced
Detected in all
lens:
62.8
PSMD7
ENSSSCG00000032908
ENSG00000103035
Proteasome 26S subunit, non-ATPase 7
Low tissue specificity
Detected in all
PSME3
ENSSSCG00000017385
ENSG00000131467
Proteasome activator complex subunit 3
Low tissue specificity
Detected in all
PSMG3
ENSSSCG00000007556
ENSG00000157778
Proteasome assembly chaperone 3
Low tissue specificity
Detected in all
PTAR1
ENSSSCG00000005252
ENSG00000188647
Protein prenyltransferase alpha subunit repeat containing 1
Low tissue specificity
Detected in all
PTBP2
ENSSSCG00000006879
ENSG00000117569
Polypyrimidine tract binding protein 2
Low tissue specificity
Detected in all
PTCD3
ENSSSCG00000008225
ENSG00000132300
Pentatricopeptide repeat domain-containing protein 3, mitochondrial
Low tissue specificity
Detected in all
PTGES3
ENSSSCG00000000406
ENSG00000110958
Prostaglandin E synthase 3
Low tissue specificity
Detected in all
PTP4A1
ENSSSCG00000025941
ENSG00000112245
Protein tyrosine phosphatase type IVA, member 1
Low tissue specificity
Detected in all
PTP4A2
ENSSSCG00000039885
ENSG00000184007
Protein tyrosine phosphatase type IVA 2
Low tissue specificity
Detected in all
PTPMT1
ENSSSCG00000013226
ENSG00000110536
Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1
Low tissue specificity
Detected in all
PTPN11
ENSSSCG00000030289
ENSG00000179295
Protein tyrosine phosphatase, non-receptor type 11
Low tissue specificity
Detected in all
PTPN4
ENSSSCG00000015743
ENSG00000088179
Protein tyrosine phosphatase, non-receptor type 4
Tissue enhanced
Detected in all
brain:
34.1
skeletal muscle:
32.3
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