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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PIN1
ENSSSCG00000039619
ENSG00000127445
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Low tissue specificity
Detected in all
PIP4P1
ENSSSCG00000038172
ENSG00000165782
Phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1
Low tissue specificity
Detected in all
PITHD1
ENSSSCG00000023495
ENSG00000057757
PITH domain containing 1
Tissue enhanced
Detected in all
lens:
61.1
PJA2
ENSSSCG00000022845
ENSG00000198961
Praja ring finger ubiquitin ligase 2
Tissue enhanced
Detected in all
brain:
57.1
PJVK
ENSSSCG00000015998
ENSG00000204311
Pejvakin
Tissue enhanced
Detected in many
choroid plexus:
12.7
PKIB
ENSSSCG00000004236
ENSG00000135549
CAMP-dependent protein kinase inhibitor beta
Tissue enhanced
Detected in many
brain:
30.0
cornea:
40.2
male glands:
32.0
stomach:
35.0
PLAA
ENSSSCG00000005126
ENSG00000137055
Phospholipase A2 activating protein
Low tissue specificity
Detected in all
PLRG1
ENSSSCG00000008996
ENSG00000171566
Pleiotropic regulator 1
Low tissue specificity
Detected in all
PMS1
ENSSSCG00000016045
ENSG00000064933
PMS1 homolog 1, mismatch repair system component
Low tissue specificity
Detected in all
PNP
ENSSSCG00000002135
ENSG00000198805
Purine nucleoside phosphorylase
Low tissue specificity
Detected in many
PNPLA8
ENSSSCG00000015446
ENSG00000135241
Patatin like phospholipase domain containing 8
Low tissue specificity
Detected in all
PNPO
ENSSSCG00000032782
ENSG00000108439
Pyridoxamine 5'-phosphate oxidase
Low tissue specificity
Detected in all
PNRC2
ENSSSCG00000023326
ENSG00000189266
Proline-rich nuclear receptor coactivator 2
Low tissue specificity
Detected in all
POGK
ENSSSCG00000006319
ENSG00000143157
Pogo transposable element with KRAB domain
Low tissue specificity
Detected in all
POLE3
ENSSSCG00000005478
ENSG00000148229
DNA polymerase epsilon 3, accessory subunit
Low tissue specificity
Detected in all
POLI
ENSSSCG00000004529
ENSG00000101751
DNA polymerase iota
Low tissue specificity
Detected in all
POLR1B
ENSSSCG00000008098
ENSG00000125630
RNA polymerase I subunit B
Low tissue specificity
Detected in all
POLR1C
ENSSSCG00000028007
ENSG00000171453
RNA polymerase I subunit C
Low tissue specificity
Detected in all
POLR1E
ENSSSCG00000005347
ENSG00000137054
RNA polymerase I subunit E
Low tissue specificity
Detected in all
POLR2B
ENSSSCG00000022955
ENSG00000047315
RNA polymerase II subunit B
Low tissue specificity
Detected in all
POLR2D
ENSSSCG00000039230
ENSG00000144231
RNA polymerase II subunit D
Low tissue specificity
Detected in all
POLR2G
ENSSSCG00000025571
ENSG00000168002
RNA polymerase II subunit G
Low tissue specificity
Detected in all
POLR2H
ENSSSCG00000022507
ENSG00000163882
DNA-directed RNA polymerases I, II, and III subunit RPABC3
Low tissue specificity
Detected in all
POLR2K
ENSSSCG00000021180
ENSG00000147669
RNA polymerase II subunit K
Low tissue specificity
Detected in all
POLR3F
ENSSSCG00000007095
ENSG00000132664
RNA polymerase III subunit F
Low tissue specificity
Detected in all
POMP
ENSSSCG00000037170
ENSG00000132963
Proteasome maturation protein
Tissue enhanced
Detected in all
lens:
78.2
PON2
ENSSSCG00000015331
ENSG00000105854
Serum paraoxonase/arylesterase 2 precursor
Tissue enhanced
Detected in many
lens:
39.3
PPA1
ENSSSCG00000010261
ENSG00000180817
Pyrophosphatase (inorganic) 1
Tissue enhanced
Detected in many
brain:
55.9
pineal gland:
64.9
PPA2
ENSSSCG00000022788
ENSG00000138777
Pyrophosphatase (inorganic) 2
Low tissue specificity
Detected in all
PPHLN1
ENSSSCG00000000793
ENSG00000134283
Periphilin 1
Low tissue specificity
Detected in all
PPID
ENSSSCG00000008878
ENSG00000171497
Peptidyl-prolyl cis-trans isomerase D
Tissue enhanced
Detected in all
lens:
60.1
PPIG
ENSSSCG00000031123
ENSG00000138398
Peptidylprolyl isomerase G
Low tissue specificity
Detected in all
PPIL3
ENSSSCG00000016096
ENSG00000240344
Peptidylprolyl isomerase like 3
Low tissue specificity
Detected in all
PPIL4
ENSSSCG00000028867
ENSG00000131013
Peptidylprolyl isomerase like 4
Low tissue specificity
Detected in all
PPIP5K2
ENSSSCG00000024999
ENSG00000145725
Diphosphoinositol pentakisphosphate kinase 2
Tissue enhanced
Detected in all
lens:
64.2
PPM1A
ENSSSCG00000005084
ENSG00000100614
Protein phosphatase, Mg2+/Mn2+ dependent 1A
Low tissue specificity
Detected in all
PPM1B
ENSSSCG00000008451
ENSG00000138032
Protein phosphatase, Mg2+/Mn2+ dependent 1B
Low tissue specificity
Detected in all
PPME1
ENSSSCG00000020856
ENSG00000214517
Protein phosphatase methylesterase 1
Tissue enhanced
Detected in all
pineal gland:
67.5
PPP1CB
ENSSSCG00000008540
ENSG00000213639
Serine/threonine-protein phosphatase PP1-beta catalytic subunit
Low tissue specificity
Detected in all
PPP1CC
ENSSSCG00000009828
ENSG00000186298
Serine/threonine-protein phosphatase PP1-gamma catalytic subunit
Low tissue specificity
Detected in all
PPP1R11
ENSSSCG00000024259
ENSG00000204619
Protein phosphatase 1 regulatory subunit 11
Low tissue specificity
Detected in all
PPP1R21
ENSSSCG00000008423
ENSG00000162869
Protein phosphatase 1 regulatory subunit 21
Low tissue specificity
Detected in all
PPP1R8
ENSSSCG00000021634
ENSG00000117751
Nuclear inhibitor of protein phosphatase 1
Low tissue specificity
Detected in all
PPP2CA
ENSSSCG00000014298
ENSG00000113575
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
Low tissue specificity
Detected in all
PPP2CB
ENSSSCG00000015842
ENSG00000104695
Protein phosphatase 2 catalytic subunit beta
Tissue enhanced
Detected in all
lens:
60.8
PPP2R1B
ENSSSCG00000029538
ENSG00000137713
Protein phosphatase 2 scaffold subunit Abeta
Low tissue specificity
Detected in all
PPP2R2A
ENSSSCG00000009657
ENSG00000221914
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform
Low tissue specificity
Detected in all
PPP2R3C
ENSSSCG00000031498
ENSG00000092020
Protein phosphatase 2 regulatory subunit B''gamma
Low tissue specificity
Detected in all
PPP2R5E
ENSSSCG00000026382
ENSG00000154001
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform
Low tissue specificity
Detected in all
PPP3CB
ENSSSCG00000010301
ENSG00000107758
Protein phosphatase 3 catalytic subunit beta
Low tissue specificity
Detected in all
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