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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
OXLD1
ENSSSCG00000033788
ENSG00000204237
Oxidoreductase like domain containing 1
Tissue enhanced
Detected in all
lens:
52.3
OXR1
ENSSSCG00000006037
ENSG00000164830
Oxidation resistance 1
Tissue enhanced
Detected in all
brain:
55.0
PAAF1
ENSSSCG00000014831
ENSG00000175575
Proteasomal ATPase associated factor 1
Low tissue specificity
Detected in all
PAFAH1B2
ENSSSCG00000024027
ENSG00000168092
Platelet activating factor acetylhydrolase 1b catalytic subunit 2
Tissue enhanced
Detected in all
brain:
44.7
PAIP1
ENSSSCG00000016874
ENSG00000172239
Poly(A) binding protein interacting protein 1
Tissue enhanced
Detected in all
lens:
70.1
PAIP2
ENSSSCG00000026606
ENSG00000120727
Poly(A) binding protein interacting protein 2
Low tissue specificity
Detected in all
PAK2
ENSSSCG00000011843
ENSG00000180370
P21 (RAC1) activated kinase 2
Low tissue specificity
Detected in all
PANK3
ENSSSCG00000017014
ENSG00000120137
Pantothenate kinase 3
Low tissue specificity
Detected in all
PAPOLG
ENSSSCG00000008389
ENSG00000115421
Poly(A) polymerase gamma
Low tissue specificity
Detected in all
PARG
ENSSSCG00000010396
ENSG00000227345
Poly(ADP-ribose) glycohydrolase
Low tissue specificity
Detected in all
PBDC1
ENSSSCG00000030577
ENSG00000102390
Polysaccharide biosynthesis domain containing 1
Low tissue specificity
Detected in all
PCMT1
ENSSSCG00000004103
ENSG00000120265
Protein-L-isoaspartate(D-aspartate) O-methyltransferase
Low tissue specificity
Detected in all
PCNP
ENSSSCG00000036491
ENSG00000081154
PEST proteolytic signal containing nuclear protein
Low tissue specificity
Detected in all
PDCD10
ENSSSCG00000011739
ENSG00000114209
Programmed cell death protein 10
Low tissue specificity
Detected in all
PDCL
ENSSSCG00000038554
ENSG00000136940
Phosducin like
Low tissue specificity
Detected in all
PDE6D
ENSSSCG00000016279
ENSG00000156973
Phosphodiesterase 6D
Low tissue specificity
Detected in all
PDIK1L
ENSSSCG00000030660
ENSG00000175087
PDLIM1 interacting kinase 1 like
Low tissue specificity
Detected in all
PDK3
ENSSSCG00000012181
ENSG00000067992
Pyruvate dehydrogenase kinase 3
Low tissue specificity
Detected in all
PDP1
ENSSSCG00000006107
ENSG00000164951
Pyruvate dehyrogenase phosphatase catalytic subunit 1
Tissue enhanced
Detected in all
brain:
54.0
PDP2
ENSSSCG00000036067
ENSG00000172840
Pyruvate dehyrogenase phosphatase catalytic subunit 2
Low tissue specificity
Detected in all
PDS5B
ENSSSCG00000009345
ENSG00000083642
PDS5 cohesin associated factor B
Low tissue specificity
Detected in all
PDZD11
ENSSSCG00000012378
ENSG00000120509
PDZ domain-containing protein 11
Low tissue specificity
Detected in all
PEX11A
ENSSSCG00000027052
ENSG00000166821
Peroxisomal biogenesis factor 11 alpha
Low tissue specificity
Detected in all
PEX13
ENSSSCG00000008387
ENSG00000162928
Peroxisomal biogenesis factor 13
Low tissue specificity
Detected in all
PEX2
ENSSSCG00000006168
ENSG00000164751
Peroxisome biogenesis factor 2
Low tissue specificity
Detected in all
PEX3
ENSSSCG00000004134
ENSG00000034693
Peroxisomal biogenesis factor 3
Low tissue specificity
Detected in all
PFDN1
ENSSSCG00000038493
ENSG00000113068
Prefoldin subunit 1
Low tissue specificity
Detected in all
PFDN2
ENSSSCG00000006366
ENSG00000143256
Prefoldin subunit 2
Tissue enhanced
Detected in all
lens:
43.0
PFDN4
ENSSSCG00000007487
Prefoldin subunit 4
Low tissue specificity
Detected in all
PGAM1
ENSSSCG00000010517
ENSG00000171314
Phosphoglycerate mutase 1
Low tissue specificity
Detected in all
PGAP1
ENSSSCG00000016073
ENSG00000197121
Post-GPI attachment to proteins 1
Low tissue specificity
Detected in all
PGGT1B
ENSSSCG00000014215
ENSG00000164219
Protein geranylgeranyltransferase type I subunit beta
Low tissue specificity
Detected in all
PGRMC1
ENSSSCG00000012625
ENSG00000101856
Membrane-associated progesterone receptor component 1
Tissue enhanced
Detected in all
liver:
119.5
PHAX
ENSSSCG00000014244
ENSG00000164902
Phosphorylated adaptor for RNA export
Tissue enriched
Detected in all
lens:
61.9
PHF23
ENSSSCG00000017937
ENSG00000040633
PHD finger protein 23
Low tissue specificity
Detected in all
PHF6
ENSSSCG00000022942
ENSG00000156531
PHD finger protein 6
Low tissue specificity
Detected in all
PHOSPHO2
ENSSSCG00000015936
ENSG00000144362
Pyridoxal phosphate phosphatase PHOSPHO2
Low tissue specificity
Detected in all
PHTF1
ENSSSCG00000006766
ENSG00000116793
Putative homeodomain transcription factor 1
Low tissue specificity
Detected in all
PIAS2
ENSSSCG00000034730
ENSG00000078043
Protein inhibitor of activated STAT 2
Low tissue specificity
Detected in all
PICALM
ENSSSCG00000014913
ENSG00000073921
Phosphatidylinositol-binding clathrin assembly protein
Low tissue specificity
Detected in all
PIGK
ENSSSCG00000038329
ENSG00000142892
GPI-anchor transamidase precursor
Tissue enhanced
Detected in all
pituitary gland:
32.3
PIGP
ENSSSCG00000012061
ENSG00000185808
Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
Tissue enhanced
Detected in all
choroid plexus:
51.7
lens:
99.5
PIGS
ENSSSCG00000026706
ENSG00000087111
GPI transamidase component PIG-S
Tissue enhanced
Detected in all
retina:
62.4
PIGU
ENSSSCG00000007282
ENSG00000101464
Phosphatidylinositol glycan anchor biosynthesis class U protein precursor
Low tissue specificity
Detected in all
PIGW
ENSSSCG00000035006
ENSG00000277161
Phosphatidylinositol glycan anchor biosynthesis class W
Low tissue specificity
Detected in many
PIGX
ENSSSCG00000026934
ENSG00000163964
Phosphatidylinositol glycan anchor biosynthesis class X
Low tissue specificity
Detected in all
PIK3C2A
ENSSSCG00000025406
ENSG00000011405
Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
Low tissue specificity
Detected in all
PIK3C3
ENSSSCG00000003749
ENSG00000078142
Phosphatidylinositol 3-kinase catalytic subunit type 3
Low tissue specificity
Detected in all
PIK3CA
ENSSSCG00000030413
ENSG00000121879
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
Low tissue specificity
Detected in all
PIK3CB
ENSSSCG00000021203
ENSG00000051382
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta
Tissue enhanced
Detected in all
lens:
43.0
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