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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000002723
ENSG00000090861
Low tissue specificity
Detected in all
na
ENSSSCG00000002790
ENSG00000168701
Tissue enhanced
Detected in all
male glands:
66.7
na
ENSSSCG00000002844
ENSG00000102893
Tissue enhanced
Detected in all
lens:
108.5
skeletal muscle:
69.4
na
ENSSSCG00000002855
ENSG00000105173
Tissue enhanced
Detected in all
testis:
21.0
na
ENSSSCG00000002875
ENSG00000126249
Low tissue specificity
Detected in all
na
ENSSSCG00000003520
Cell division control protein 42 homolog
Low tissue specificity
Detected in all
na
ENSSSCG00000003772
ENSG00000036549
Low tissue specificity
Detected in all
na
ENSSSCG00000003775
ENSG00000137955
Low tissue specificity
Detected in all
na
ENSSSCG00000003792
ENSG00000066557
Low tissue specificity
Detected in all
na
ENSSSCG00000003849
Low tissue specificity
Detected in all
na
ENSSSCG00000003914
Low tissue specificity
Detected in all
na
ENSSSCG00000004151
Tissue enhanced
Detected in many
lens:
19.7
na
ENSSSCG00000004221
ENSG00000111911
Low tissue specificity
Detected in all
na
ENSSSCG00000004261
Low tissue specificity
Detected in many
na
ENSSSCG00000004342
ENSG00000123545
Tissue enriched
Detected in many
epididymis:
62.7
na
ENSSSCG00000004353
Cyclin-C
Low tissue specificity
Detected in all
na
ENSSSCG00000004583
ENSG00000140307
Low tissue specificity
Detected in all
na
ENSSSCG00000004624
ENSG00000069956
Low tissue specificity
Detected in all
na
ENSSSCG00000004963
ENSG00000140350
Low tissue specificity
Detected in all
na
ENSSSCG00000005040
ENSG00000100522
Glucosamine 6-phosphate N-acetyltransferase
Tissue enhanced
Detected in all
male glands:
51.5
na
ENSSSCG00000005184
ENSG00000164975
Low tissue specificity
Detected in all
na
ENSSSCG00000005440
ENSG00000119328
Low tissue specificity
Detected in all
na
ENSSSCG00000005441
ENSG00000070061
Low tissue specificity
Detected in all
na
ENSSSCG00000005453
Thioredoxin
Tissue enhanced
Detected in all
ovary:
149.3
na
ENSSSCG00000005656
Protein SET
Low tissue specificity
Detected in all
na
ENSSSCG00000005768
Low tissue specificity
Detected in all
na
ENSSSCG00000005959
ENSG00000153310
Protein FAM49B
Low tissue specificity
Detected in all
na
ENSSSCG00000005982
ENSG00000156795
Tissue enhanced
Detected in all
brain:
27.6
na
ENSSSCG00000006024
Low tissue specificity
Detected in all
na
ENSSSCG00000006062
14-3-3 protein zeta/delta
Low tissue specificity
Detected in all
na
ENSSSCG00000006101
ENSG00000197275,ENSG00000265817
Tissue enhanced
Detected in many
pineal gland:
111.6
retina:
39.3
na
ENSSSCG00000006260
ENSG00000120992
Tissue enhanced
Detected in all
testis:
55.9
na
ENSSSCG00000006694
ENSG00000117262,ENSG00000188092
Low tissue specificity
Detected in all
na
ENSSSCG00000006830
Proteasome subunit alpha type-5
Low tissue specificity
Detected in all
na
ENSSSCG00000006996
ENSG00000273748
Low tissue specificity
Detected in all
na
ENSSSCG00000007031
Tissue enhanced
Detected in all
testis:
64.3
na
ENSSSCG00000007089
ENSG00000125871
Low tissue specificity
Detected in all
na
ENSSSCG00000007098
ENSG00000125821,ENSG00000284776
Low tissue specificity
Detected in all
na
ENSSSCG00000007188
Peptidyl-prolyl cis-trans isomerase FKBP1A
Low tissue specificity
Detected in all
na
ENSSSCG00000007203
ENSG00000101266
Low tissue specificity
Detected in all
na
ENSSSCG00000007253
ENSG00000101367
Microtubule-associated protein RP/EB family member 1
Low tissue specificity
Detected in all
na
ENSSSCG00000007500
Low tissue specificity
Detected in many
na
ENSSSCG00000007525
ENSG00000101166
PRELI domain containing protein 3B
Low tissue specificity
Detected in all
na
ENSSSCG00000007609
Actin-related protein 2/3 complex subunit 1A
Low tissue specificity
Detected in all
na
ENSSSCG00000007749
Low tissue specificity
Detected in all
na
ENSSSCG00000007826
Low tissue specificity
Detected in all
na
ENSSSCG00000008056
ENSG00000185883
Low tissue specificity
Detected in all
na
ENSSSCG00000008183
ENSG00000185414
Tissue enhanced
Detected in all
lens:
40.1
na
ENSSSCG00000008236
ENSG00000152291
Low tissue specificity
Detected in all
na
ENSSSCG00000008352
ENSG00000115946
Low tissue specificity
Detected in all
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