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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other congenital disorders
Other diseases
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Subclass
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LMBRD1
ENSSSCG00000004272
ENSG00000168216
LMBR1 domain containing 1
Tissue enhanced
Detected in all
brain:
38.6
LMBRD2
ENSSSCG00000016834
ENSG00000164187
LMBR1 domain containing 2
Low tissue specificity
Detected in all
LRIF1
ENSSSCG00000006799
ENSG00000121931
Ligand dependent nuclear receptor interacting factor 1
Group enriched
Detected in all
lens:
36.7
retina:
17.1
testis:
43.6
LRPPRC
ENSSSCG00000008452
ENSG00000138095
Leucine rich pentatricopeptide repeat containing
Low tissue specificity
Detected in all
LRRC59
ENSSSCG00000028019
ENSG00000108829
Leucine-rich repeat-containing protein 59
Low tissue specificity
Detected in all
LRRCC1
ENSSSCG00000006146
ENSG00000133739
Leucine rich repeat and coiled-coil centrosomal protein 1
Low tissue specificity
Detected in all
LRRIQ3
ENSSSCG00000003784
ENSG00000162620
Leucine rich repeats and IQ motif containing 3
Tissue enhanced
Detected in many
lens:
22.2
pineal gland:
23.6
LSM1
ENSSSCG00000039058
ENSG00000175324
LSM1 homolog, mRNA degradation associated
Low tissue specificity
Detected in all
LSM12
ENSSSCG00000032394
ENSG00000161654
LSM12 homolog
Tissue enhanced
Detected in all
lens:
71.2
LSM4
ENSSSCG00000034314
ENSG00000130520
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
Low tissue specificity
Detected in all
LSM6
ENSSSCG00000035973
ENSG00000164167
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
Low tissue specificity
Detected in all
LSM7
ENSSSCG00000013463
ENSG00000130332
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
Low tissue specificity
Detected in all
LSM8
ENSSSCG00000021652
ENSG00000128534
LSM8 homolog, U6 small nuclear RNA associated
Low tissue specificity
Detected in all
LTN1
ENSSSCG00000030528
ENSG00000198862
Listerin E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
LYRM1
ENSSSCG00000007853
ENSG00000102897
LYR motif containing 1
Low tissue specificity
Detected in all
LYRM2
ENSSSCG00000004324
ENSG00000083099
LYR motif containing 2
Low tissue specificity
Detected in all
LYRM4
ENSSSCG00000031269
ENSG00000214113
LYR motif containing 4
Low tissue specificity
Detected in all
LYRM7
ENSSSCG00000033213
ENSG00000186687
LYR motif containing 7
Low tissue specificity
Detected in all
LZIC
ENSSSCG00000033257
ENSG00000162441
Leucine zipper and CTNNBIP1 domain containing
Low tissue specificity
Detected in all
M6PR
ENSSSCG00000040743
ENSG00000003056
Mannose-6-phosphate receptor, cation dependent
Low tissue specificity
Detected in all
MACO1
ENSSSCG00000030682
ENSG00000204178
Macoilin
Low tissue specificity
Detected in all
MAD2L1BP
ENSSSCG00000016346
ENSG00000124688
MAD2L1 binding protein
Low tissue specificity
Detected in all
MAGED1
ENSSSCG00000012318
ENSG00000179222
Melanoma-associated antigen D1
Low tissue specificity
Detected in all
MAIP1
ENSSSCG00000036676
ENSG00000162972
Matrix AAA peptidase interacting protein 1
Low tissue specificity
Detected in all
MALSU1
ENSSSCG00000036722
ENSG00000156928
Mitochondrial assembly of ribosomal large subunit 1
Low tissue specificity
Detected in all
MAN1A2
ENSSSCG00000006730
ENSG00000198162
Mannosidase alpha class 1A member 2
Low tissue specificity
Detected in all
MAN2A1
ENSSSCG00000014195
ENSG00000112893
Mannosidase alpha class 2A member 1
Low tissue specificity
Detected in all
MANEA
ENSSSCG00000035648
ENSG00000172469
Mannosidase endo-alpha
Low tissue specificity
Detected in all
MANF
ENSSSCG00000032914
ENSG00000145050
Mesencephalic astrocyte-derived neurotrophic factor precursor
Low tissue specificity
Detected in all
MAOB
ENSSSCG00000023215
ENSG00000069535
Amine oxidase
Tissue enhanced
Detected in many
liver:
102.0
ovary:
41.3
MAP1LC3B
ENSSSCG00000002655
ENSG00000140941
Microtubule-associated proteins 1A/1B light chain 3B
Low tissue specificity
Detected in all
MAP3K7
ENSSSCG00000004334
ENSG00000135341
Mitogen-activated protein kinase kinase kinase 7
Low tissue specificity
Detected in all
MAPK8
ENSSSCG00000010380
ENSG00000107643
Mitogen-activated protein kinase 8
Low tissue specificity
Detected in all
MAPK9
ENSSSCG00000014010
ENSG00000050748
Mitogen-activated protein kinase 9
Low tissue specificity
Detected in all
MARCH5
ENSSSCG00000039887
ENSG00000198060
Membrane associated ring-CH-type finger 5
Low tissue specificity
Detected in all
MARCH6
ENSSSCG00000017094
ENSG00000145495
E3 ubiquitin-protein ligase MARCH6
Low tissue specificity
Detected in all
MARS
ENSSSCG00000023318
ENSG00000166986
Methionyl-tRNA synthetase
Low tissue specificity
Detected in all
MAT2B
ENSSSCG00000021229
ENSG00000038274
Methionine adenosyltransferase 2 subunit beta
Low tissue specificity
Detected in all
MAX
ENSSSCG00000037267
ENSG00000125952
MYC associated factor X
Low tissue specificity
Detected in all
MBD4
ENSSSCG00000033303
ENSG00000129071
Methyl-CpG binding domain 4, DNA glycosylase
Low tissue specificity
Detected in all
MBIP
ENSSSCG00000001946
ENSG00000151332
MAP3K12 binding inhibitory protein 1
Low tissue specificity
Detected in all
MBTPS2
ENSSSCG00000012165
ENSG00000012174
Membrane bound transcription factor peptidase, site 2
Low tissue specificity
Detected in all
MCAT
ENSSSCG00000000031
ENSG00000100294
Malonyl-CoA-acyl carrier protein transacylase
Low tissue specificity
Detected in all
MCCC2
ENSSSCG00000016971
ENSG00000131844
Methylcrotonoyl-CoA carboxylase 2
Low tissue specificity
Detected in all
MCM6
ENSSSCG00000035564
ENSG00000076003
Minichromosome maintenance complex component 6
Tissue enhanced
Detected in all
lymphoid tissue:
38.8
MCMBP
ENSSSCG00000010688
ENSG00000197771
Mini-chromosome maintenance complex-binding protein
Tissue enriched
Detected in all
brain:
60.3
ME2
ENSSSCG00000004522
ENSG00000082212
Malic enzyme 2
Low tissue specificity
Detected in all
MEAF6
ENSSSCG00000034611
ENSG00000163875
Chromatin modification-related protein MEAF6
Low tissue specificity
Detected in all
MED11
ENSSSCG00000017919
ENSG00000161920
Mediator of RNA polymerase II transcription subunit 11
Low tissue specificity
Detected in all
MED21
ENSSSCG00000000552
ENSG00000152944
Mediator of RNA polymerase II transcription subunit 21
Low tissue specificity
Detected in all
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