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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GNAS
ENSSSCG00000007520
ENSG00000087460
Guanine nucleotide-binding protein G(s) subunit alpha isoform f
Low tissue specificity
Detected in all
GNB1
ENSSSCG00000021890
ENSG00000078369
G protein subunit beta 1
Tissue enhanced
Detected in all
retina:
163.4
GNG10
ENSSSCG00000037964
ENSG00000242616
G protein subunit gamma 10
Low tissue specificity
Detected in all
GNG2
ENSSSCG00000028092
ENSG00000186469
G protein subunit gamma 2
Tissue enhanced
Detected in many
brain:
49.6
male glands:
43.2
GNL3L
ENSSSCG00000012336
ENSG00000130119
G protein nucleolar 3 like
Tissue enriched
Detected in all
lens:
61.7
GNPDA2
ENSSSCG00000008808
ENSG00000163281
Glucosamine-6-phosphate deaminase 2
Low tissue specificity
Detected in all
GOLGA7
ENSSSCG00000020715
ENSG00000147533
Golgin A7
Tissue enriched
Detected in all
brain:
83.6
GOLT1B
ENSSSCG00000000579
ENSG00000111711
Vesicle transport protein GOT1B
Low tissue specificity
Detected in all
GON7
ENSSSCG00000002459
ENSG00000170270
EKC/KEOPS complex subunit GON7
Low tissue specificity
Detected in all
GPALPP1
ENSSSCG00000009419
ENSG00000133114
GPALPP motifs containing 1
Low tissue specificity
Detected in all
GPBP1
ENSSSCG00000016922
ENSG00000062194
GC-rich promoter binding protein 1
Low tissue specificity
Detected in all
GPCPD1
ENSSSCG00000007043
ENSG00000125772
Glycerophosphocholine phosphodiesterase 1
Tissue enhanced
Detected in all
thyroid gland:
57.9
GPD2
ENSSSCG00000015872
ENSG00000115159
Glycerol-3-phosphate dehydrogenase 2
Tissue enhanced
Detected in many
brain:
30.8
GPN1
ENSSSCG00000008546
ENSG00000198522
GPN-loop GTPase 1
Low tissue specificity
Detected in all
GPN3
ENSSSCG00000009820
ENSG00000111231
GPN-loop GTPase 3
Low tissue specificity
Detected in all
GPR180
ENSSSCG00000009492
ENSG00000152749
G protein-coupled receptor 180
Low tissue specificity
Detected in all
GPR33
ENSSSCG00000025131
ENSG00000214943
Probable G-protein coupled receptor 33
Low tissue specificity
Detected in many
GRSF1
ENSSSCG00000008940
ENSG00000132463
G-rich RNA sequence binding factor 1
Low tissue specificity
Detected in all
GSK3B
ENSSSCG00000011889
ENSG00000082701
Glycogen synthase kinase-3 beta
Low tissue specificity
Detected in all
GSPT1
ENSSSCG00000021118
ENSG00000103342
G1 to S phase transition 1
Tissue enhanced
Detected in all
lens:
116.6
GSTCD
ENSSSCG00000023548
ENSG00000138780
Glutathione S-transferase C-terminal domain containing
Low tissue specificity
Detected in all
GSTP1
ENSSSCG00000032003
ENSG00000084207
Glutathione S-transferase pi 1
Tissue enhanced
Detected in all
lens:
170.7
GTDC1
ENSSSCG00000015670
ENSG00000121964
Glycosyltransferase like domain containing 1
Low tissue specificity
Detected in all
GTF2A1
ENSSSCG00000002411
ENSG00000165417
General transcription factor IIA subunit 1
Low tissue specificity
Detected in all
GTF2B
ENSSSCG00000006926
ENSG00000137947
General transcription factor IIB
Low tissue specificity
Detected in all
GTF2E2
ENSSSCG00000015845
ENSG00000197265
Transcription initiation factor IIE subunit beta
Low tissue specificity
Detected in all
GTF2F2
ENSSSCG00000034156
ENSG00000188342
General transcription factor IIF subunit 2
Low tissue specificity
Detected in all
GTF2H1
ENSSSCG00000013367
ENSG00000110768
General transcription factor IIH subunit 1
Low tissue specificity
Detected in all
GTF2H3
ENSSSCG00000009769
ENSG00000111358
General transcription factor IIH subunit 3
Low tissue specificity
Detected in all
GTF2H5
ENSSSCG00000024019
ENSG00000272047
General transcription factor IIH subunit 5
Low tissue specificity
Detected in all
GTF2I
ENSSSCG00000007721
ENSG00000263001
General transcription factor IIi
Low tissue specificity
Detected in all
GTF3C3
ENSSSCG00000016070
ENSG00000119041
General transcription factor IIIC subunit 3
Low tissue specificity
Detected in all
GTF3C6
ENSSSCG00000004393
ENSG00000155115
General transcription factor IIIC subunit 6
Low tissue specificity
Detected in all
GXYLT1
ENSSSCG00000031701
ENSG00000151233
Glucoside xylosyltransferase 1
Low tissue specificity
Detected in all
H2AFZ
ENSSSCG00000009178
Histone H2A.Z
Tissue enhanced
Detected in all
male glands:
42.6
H3F3A
ENSSSCG00000023971
ENSG00000163041
Histone H3.3
Low tissue specificity
Detected in all
HACD3
ENSSSCG00000004935
ENSG00000074696
3-hydroxyacyl-CoA dehydratase 3
Tissue enhanced
Detected in all
male glands:
56.2
HACE1
ENSSSCG00000004364
ENSG00000085382
E3 ubiquitin-protein ligase HACE1
Low tissue specificity
Detected in all
HAT1
ENSSSCG00000015952
ENSG00000128708
Histone acetyltransferase 1
Low tissue specificity
Detected in all
HAUS1
ENSSSCG00000004498
ENSG00000152240
HAUS augmin-like complex subunit 1
Low tissue specificity
Detected in all
HAX1
ENSSSCG00000006552
ENSG00000143575
HCLS1 associated protein X-1
Low tissue specificity
Detected in all
HBS1L
ENSSSCG00000004169
ENSG00000112339
HBS1 like translational GTPase
Low tissue specificity
Detected in all
HCFC2
ENSSSCG00000000846
ENSG00000111727
Host cell factor C2
Low tissue specificity
Detected in all
HDAC2
ENSSSCG00000004432
ENSG00000196591
Histone deacetylase 2
Low tissue specificity
Detected in all
HDHD2
ENSSSCG00000005771
ENSG00000167220
Haloacid dehalogenase like hydrolase domain containing 2
Tissue enhanced
Detected in all
brain:
33.3
HEATR5B
ENSSSCG00000008498
ENSG00000008869
HEAT repeat containing 5B
Low tissue specificity
Detected in all
HIF1A
ENSSSCG00000005096
ENSG00000100644
Hypoxia-inducible factor 1-alpha
Tissue enhanced
Detected in all
cartilage:
106.3
HIST2H2AB
ENSSSCG00000037533
ENSG00000184270
Histone cluster 2 H2A family member b
Tissue enhanced
Detected in all
lymphoid tissue:
59.4
HK1
ENSSSCG00000010253
ENSG00000156515
Hexokinase-1
Tissue enhanced
Detected in all
retina:
96.7
HLTF
ENSSSCG00000025293
ENSG00000071794
Helicase like transcription factor
Low tissue specificity
Detected in all
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