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Human disease related genes
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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910 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KSR2
ENSSSCG00000009855
ENSG00000171435
Kinase suppressor of ras 2
Tissue enhanced
Detected in some
brain:
19.3
pineal gland:
12.2
pituitary gland:
21.3
retina:
9.7
LANCL3
ENSSSCG00000037269
ENSG00000147036
LanC like 3
Tissue enhanced
Detected in many
brain:
13.2
stomach:
9.4
LGI1
ENSSSCG00000010481
ENSG00000108231
Leucine rich glioma inactivated 1
Low tissue specificity
Detected in all
LHFPL4
ENSSSCG00000011543
ENSG00000156959
LHFPL tetraspan subfamily member 4
Group enriched
Detected in some
brain:
17.3
pineal gland:
6.6
pituitary gland:
8.2
retina:
13.2
LHFPL5
ENSSSCG00000001553
ENSG00000197753
LHFPL tetraspan subfamily member 5
Tissue enhanced
Detected in some
brain:
8.5
epididymis:
9.7
pineal gland:
4.3
LINGO2
ENSSSCG00000033151
ENSG00000174482
Leucine rich repeat and Ig domain containing 2
Tissue enhanced
Detected in many
brain:
16.3
male glands:
15.3
vagus nerve:
13.1
LINGO3
ENSSSCG00000013462
ENSG00000220008
Leucine rich repeat and Ig domain containing 3
Group enriched
Detected in some
brain:
28.5
pineal gland:
7.1
retina:
8.8
LMO3
ENSSSCG00000036499
ENSG00000048540
LIM domain only protein 3
Tissue enhanced
Detected in some
brain:
43.3
pituitary gland:
10.5
thyroid gland:
12.4
LMTK3
ENSSSCG00000030561
ENSG00000142235
Lemur tyrosine kinase 3
Tissue enhanced
Detected in some
brain:
24.9
retina:
7.8
LONRF2
ENSSSCG00000008176
ENSG00000170500
LON peptidase N-terminal domain and ring finger 2
Tissue enhanced
Detected in all
brain:
17.0
epididymis:
18.6
LRFN1
ENSSSCG00000032407
ENSG00000128011
Leucine rich repeat and fibronectin type III domain containing 1
Tissue enhanced
Detected in many
brain:
15.7
LRFN3
ENSSSCG00000002927
ENSG00000126243
Leucine rich repeat and fibronectin type III domain containing 3
Tissue enhanced
Detected in many
brain:
16.3
LRFN5
ENSSSCG00000004990
ENSG00000165379
Leucine rich repeat and fibronectin type III domain containing 5
Tissue enhanced
Detected in many
brain:
16.9
cervix:
11.5
LRP11
ENSSSCG00000004101
ENSG00000120256
LDL receptor related protein 11
Tissue enhanced
Detected in all
pineal gland:
61.1
LRP12
ENSSSCG00000006039
ENSG00000147650
Low-density lipoprotein receptor-related protein 12 precursor
Low tissue specificity
Detected in all
LRRC4B
ENSSSCG00000029960
ENSG00000131409
Leucine rich repeat containing 4B
Group enriched
Detected in many
brain:
30.6
heart:
19.4
LRRC4C
ENSSSCG00000013286
ENSG00000148948
Leucine rich repeat containing 4C
Tissue enhanced
Detected in many
brain:
27.7
vagus nerve:
16.6
LRRN2
ENSSSCG00000015285
ENSG00000170382
Leucine rich repeat neuronal 2
Group enriched
Detected in many
brain:
22.8
choroid plexus:
12.8
LRRN3
ENSSSCG00000016652
ENSG00000173114
Leucine rich repeat neuronal 3
Tissue enhanced
Detected in many
brain:
27.0
pituitary gland:
20.4
retina:
18.2
LRRN4
ENSSSCG00000007049
ENSG00000125872
Leucine rich repeat neuronal 4
Tissue enhanced
Detected in some
brain:
6.4
LRRTM1
ENSSSCG00000023859
ENSG00000162951
Leucine rich repeat transmembrane neuronal 1
Tissue enhanced
Detected in some
brain:
23.3
lens:
19.3
vagus nerve:
8.4
LRRTM3
ENSSSCG00000010232
ENSG00000198739
Leucine rich repeat transmembrane neuronal 3
Tissue enhanced
Detected in many
brain:
29.4
heart:
15.5
vagus nerve:
14.9
LRRTM4
ENSSSCG00000008259
ENSG00000176204
Leucine rich repeat transmembrane neuronal 4
Tissue enhanced
Detected in many
brain:
32.1
retina:
17.9
LRTM2
ENSSSCG00000000760
ENSG00000166159
Leucine rich repeats and transmembrane domains 2
Group enriched
Detected in some
brain:
13.1
retina:
31.2
LY6H
ENSSSCG00000033353
ENSG00000176956
Lymphocyte antigen 6 family member H
Tissue enriched
Detected in some
brain:
17.0
LYSMD2
ENSSSCG00000004629
ENSG00000140280
LysM domain containing 2
Tissue enhanced
Detected in many
brain:
20.3
lens:
26.4
pineal gland:
13.6
MADD
ENSSSCG00000013235
ENSG00000110514
MAP kinase activating death domain
Low tissue specificity
Detected in all
MAGEE2
ENSSSCG00000032983
ENSG00000186675
MAGE family member E2
Group enriched
Detected in some
brain:
18.1
pineal gland:
12.6
MAP2
ENSSSCG00000016151
ENSG00000078018
Microtubule associated protein 2
Tissue enhanced
Detected in many
brain:
87.1
pineal gland:
30.2
pituitary gland:
23.3
retina:
21.2
MAP2K4
ENSSSCG00000018016
ENSG00000065559
Mitogen-activated protein kinase kinase 4
Tissue enhanced
Detected in all
brain:
34.3
MAP7D2
ENSSSCG00000012161
ENSG00000184368
MAP7 domain containing 2
Tissue enhanced
Detected in many
brain:
22.4
skin:
16.8
MAPK4
ENSSSCG00000004520
ENSG00000141639
Mitogen-activated protein kinase 4
Tissue enhanced
Detected in many
brain:
31.5
choroid plexus:
72.0
MAPK8IP2
ENSSSCG00000031660
ENSG00000008735
Mitogen-activated protein kinase 8 interacting protein 2
Tissue enhanced
Detected in some
brain:
39.8
pineal gland:
10.7
pituitary gland:
13.4
retina:
15.7
MAPT
ENSSSCG00000017311
ENSG00000186868
Microtubule associated protein tau
Tissue enhanced
Detected in all
brain:
52.7
MAST1
ENSSSCG00000013732
ENSG00000105613
Microtubule associated serine/threonine kinase 1
Tissue enhanced
Detected in all
brain:
17.3
retina:
13.1
MC1R
ENSSSCG00000020924
Melanocyte-stimulating hormone receptor
Tissue enhanced
Detected in many
brain:
11.2
ovary:
4.9
MC4R
ENSSSCG00000004904
ENSG00000166603
Melanocortin receptor 4
Group enriched
Detected in some
brain:
17.5
epididymis:
7.4
heart:
8.0
MCF2
ENSSSCG00000012712
ENSG00000101977
MCF.2 cell line derived transforming sequence
Tissue enhanced
Detected in all
brain:
20.5
pineal gland:
21.9
MEGF11
ENSSSCG00000004939
ENSG00000157890
Multiple EGF like domains 11
Tissue enriched
Detected in many
brain:
38.2
MEI4
ENSSSCG00000034152
ENSG00000269964
Meiotic double-stranded break formation protein 4
Tissue enhanced
Detected in some
brain:
6.8
pineal gland:
5.6
MEST
ENSSSCG00000016554
ENSG00000106484
Mesoderm-specific transcript homolog protein precursor
Tissue enhanced
Detected in all
adrenal gland:
35.8
pituitary gland:
86.2
MLLT11
ENSSSCG00000030278
ENSG00000213190
Protein AF1q
Group enriched
Detected in many
brain:
62.9
pineal gland:
53.3
retina:
20.3
MMP24
ENSSSCG00000040160
ENSG00000125966
Matrix metallopeptidase 24
Tissue enhanced
Detected in all
adrenal gland:
36.5
brain:
39.8
MPP2
ENSSSCG00000017367
ENSG00000108852
Membrane palmitoylated protein 2
Tissue enhanced
Detected in all
brain:
35.9
MPP6
ENSSSCG00000016717
ENSG00000105926
Membrane palmitoylated protein 6
Tissue enhanced
Detected in many
vagus nerve:
67.5
MS4A10
ENSSSCG00000037987
ENSG00000172689
Membrane spanning 4-domains A10
Low tissue specificity
Detected in all
MSRA
ENSSSCG00000009684
ENSG00000175806
Methionine sulfoxide reductase A
Tissue enhanced
Detected in all
brain:
47.4
kidney:
39.7
liver:
46.1
MTMR4
ENSSSCG00000017642
ENSG00000108389
Myotubularin related protein 4
Low tissue specificity
Detected in all
MYO16
ENSSSCG00000009543
ENSG00000041515
Myosin XVI
Tissue enhanced
Detected in some
brain:
36.7
lens:
16.1
liver:
11.6
pineal gland:
12.5
retina:
11.4
MYT1
ENSSSCG00000039212
ENSG00000196132
Myelin transcription factor 1
Tissue enhanced
Detected in some
brain:
27.3
pituitary gland:
8.0
retina:
15.7
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