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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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910 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000000882
ENSG00000185046
Tissue enriched
Detected in many
brain:
64.8
na
ENSSSCG00000001401
ENSG00000213760
V-type proton ATPase subunit G 2
Group enriched
Detected in some
brain:
48.5
pineal gland:
60.6
na
ENSSSCG00000001928
ENSG00000140488
Tissue enhanced
Detected in some
brain:
19.6
retina:
26.4
testis:
11.7
na
ENSSSCG00000002573
ENSG00000254656
Retrotransposon-like protein 1
Tissue enhanced
Detected in some
brain:
6.5
cartilage:
5.3
mouth:
4.9
pituitary gland:
7.3
na
ENSSSCG00000003045
ENSG00000105409
Sodium/potassium-transporting ATPase subunit alpha-3
Group enriched
Detected in some
brain:
82.1
pineal gland:
64.1
retina:
91.4
na
ENSSSCG00000003227
ENSG00000142549
Group enriched
Detected in some
adrenal gland:
14.7
brain:
12.6
lymphoid tissue:
6.4
pineal gland:
5.3
na
ENSSSCG00000003325
Group enriched
Detected in some
brain:
60.2
pituitary gland:
15.6
na
ENSSSCG00000003871
Low tissue specificity
Detected in all
na
ENSSSCG00000004278
Tissue enhanced
Detected in some
adrenal gland:
1.2
brain:
2.3
fallopian tube:
2.1
na
ENSSSCG00000004404
ENSG00000112290
Tissue enhanced
Detected in many
brain:
48.9
testis:
16.2
na
ENSSSCG00000004831
Tissue enhanced
Detected in many
brain:
38.7
liver:
24.7
na
ENSSSCG00000004839
ENSG00000166664
Tissue enhanced
Detected in many
brain:
13.3
cornea:
9.7
na
ENSSSCG00000007322
ENSG00000101079
Tissue enhanced
Detected in all
brain:
46.3
pineal gland:
65.1
retina:
38.4
na
ENSSSCG00000007578
ENSG00000136297
Group enriched
Detected in some
brain:
16.9
epididymis:
64.8
na
ENSSSCG00000007969
Tissue enhanced
Detected in many
brain:
9.2
lens:
6.7
retina:
6.5
na
ENSSSCG00000008066
Low tissue specificity
Detected in all
na
ENSSSCG00000008584
ENSG00000219626
Tissue enhanced
Detected in all
brain:
37.7
na
ENSSSCG00000008855
Tissue enhanced
Detected in many
brain:
12.6
pineal gland:
13.3
retina:
27.3
na
ENSSSCG00000009200
Tissue enhanced
Detected in many
brain:
82.7
thyroid gland:
26.4
na
ENSSSCG00000009430
ENSG00000023516
Tissue enhanced
Detected in all
brain:
53.3
na
ENSSSCG00000009537
ENSG00000204442
Tissue enhanced
Detected in some
brain:
20.7
epididymis:
13.1
pineal gland:
15.5
pituitary gland:
18.5
retina:
15.2
na
ENSSSCG00000009595
Tissue enriched
Detected in many
testis:
59.4
na
ENSSSCG00000010006
ENSG00000100003
SEC14-like protein 2
Tissue enriched
Detected in many
liver:
89.1
na
ENSSSCG00000010074
ENSG00000169314
Tissue enhanced
Detected in many
brain:
22.1
male glands:
20.7
retina:
16.4
na
ENSSSCG00000010344
ENSG00000185737
Tissue enhanced
Detected in many
brain:
23.6
retina:
13.6
na
ENSSSCG00000010432
ENSG00000188611
Group enriched
Detected in some
brain:
21.3
liver:
27.4
na
ENSSSCG00000010839
Tissue enhanced
Detected in many
testis:
17.0
na
ENSSSCG00000011761
ENSG00000197584,ENSG00000275163
Group enriched
Detected in some
epididymis:
35.5
lens:
9.1
na
ENSSSCG00000012003
Tissue enhanced
Detected in many
brain:
41.7
retina:
37.6
na
ENSSSCG00000012196
ENSG00000169306
Tissue enriched
Detected in some
brain:
17.6
na
ENSSSCG00000012238
ENSG00000156298,ENSG00000250349
Tissue enhanced
Detected in many
brain:
64.9
pineal gland:
25.4
na
ENSSSCG00000012430
Group enriched
Detected in some
brain:
9.4
pineal gland:
14.5
retina:
20.5
na
ENSSSCG00000012503
Tissue enhanced
Detected in some
brain:
5.8
kidney:
4.1
retina:
3.8
na
ENSSSCG00000012531
Tissue enhanced
Detected in many
brain:
4.8
na
ENSSSCG00000012607
Group enriched
Detected in some
brain:
50.8
pituitary gland:
26.0
na
ENSSSCG00000013024
Tissue enriched
Detected in some
brain:
59.1
na
ENSSSCG00000013387
ENSG00000175868
Calcitonin receptor-stimulating peptide 2
Tissue enriched
Detected in some
brain:
23.7
na
ENSSSCG00000013832
ENSG00000127529
Group enriched
Detected in some
brain:
3.6
ovary:
2.2
pineal gland:
2.3
retina:
1.9
skin:
1.1
na
ENSSSCG00000014037
Tissue enhanced
Detected in some
brain:
33.8
pineal gland:
8.4
pituitary gland:
29.0
na
ENSSSCG00000014272
ENSG00000164398
Tissue enhanced
Detected in some
adrenal gland:
27.7
brain:
29.9
pineal gland:
21.0
retina:
22.8
testis:
23.3
na
ENSSSCG00000014975
ENSG00000149972
Tissue enhanced
Detected in some
brain:
14.9
pituitary gland:
8.8
na
ENSSSCG00000015006
Tissue enhanced
Detected in many
lens:
22.9
retina:
11.3
na
ENSSSCG00000015323
ENSG00000127928
Tissue enriched
Detected in some
retina:
304.2
na
ENSSSCG00000015401
Tissue enhanced
Detected in many
brain:
38.3
epididymis:
15.9
pituitary gland:
19.6
retina:
23.8
na
ENSSSCG00000015460
Tissue enhanced
Detected in some
brain:
4.8
fallopian tube:
5.7
pituitary gland:
5.3
thyroid gland:
10.3
na
ENSSSCG00000015681
Group enriched
Detected in some
brain:
18.1
cervix:
9.1
pineal gland:
11.9
na
ENSSSCG00000016219
ENSG00000182698
Group enriched
Detected in some
brain:
59.3
pineal gland:
58.5
pituitary gland:
31.9
na
ENSSSCG00000016424
Tissue enhanced
Detected in some
brain:
14.6
cartilage:
4.4
retina:
2.7
na
ENSSSCG00000017019
Group enriched
Detected in some
brain:
26.6
choroid plexus:
36.2
heart:
18.8
pineal gland:
48.0
na
ENSSSCG00000017834
Tissue enhanced
Detected in some
adrenal gland:
3.4
brain:
9.0
pituitary gland:
6.0
retina:
4.1
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