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UMAP gene cluster
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Biological process
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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910 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GNAO1
ENSSSCG00000034192
ENSG00000087258
G protein subunit alpha o1
Tissue enhanced
Detected in many
brain:
62.7
retina:
26.2
GNAZ
ENSSSCG00000010046
ENSG00000128266
G protein subunit alpha z
Tissue enhanced
Detected in many
brain:
36.7
retina:
20.1
GNB5
ENSSSCG00000004622
ENSG00000069966
G protein subunit beta 5
Tissue enhanced
Detected in all
brain:
30.7
pineal gland:
42.1
retina:
49.7
GNG3
ENSSSCG00000032197
ENSG00000162188
G protein subunit gamma 3
Group enriched
Detected in some
brain:
62.3
pineal gland:
92.8
GNG4
ENSSSCG00000033307
ENSG00000168243
G protein subunit gamma 4
Tissue enriched
Detected in some
brain:
95.3
GOLGA7B
ENSSSCG00000040359
ENSG00000155265
Golgin A7 family member B
Group enriched
Detected in many
brain:
21.4
skin:
13.3
testis:
22.9
GPAM
ENSSSCG00000010631
ENSG00000119927
Glycerol-3-phosphate acyltransferase, mitochondrial
Tissue enhanced
Detected in all
epididymis:
107.2
liver:
36.7
GPC5
ENSSSCG00000031946
ENSG00000179399
Glypican 5
Tissue enriched
Detected in many
brain:
18.5
GPLD1
ENSSSCG00000001089
ENSG00000112293
Glycosylphosphatidylinositol specific phospholipase D1
Tissue enhanced
Detected in many
liver:
45.1
lung:
26.3
GPM6A
ENSSSCG00000023328
ENSG00000150625
Glycoprotein M6A
Tissue enhanced
Detected in some
brain:
77.2
choroid plexus:
23.5
pineal gland:
19.0
GPR101
ENSSSCG00000040432
ENSG00000165370
G protein-coupled receptor 101
Tissue enriched
Detected in single
brain:
22.3
GPR137C
ENSSSCG00000005036
ENSG00000180998
G protein-coupled receptor 137C
Tissue enhanced
Detected in many
brain:
26.3
heart:
14.8
retina:
19.6
GPR139
ENSSSCG00000007862
ENSG00000180269
G protein-coupled receptor 139
Tissue enriched
Detected in single
brain:
6.6
GPR149
ENSSSCG00000023582
ENSG00000174948
Probable G-protein coupled receptor 149
Low tissue specificity
Detected in all
GPR155
ENSSSCG00000015965
ENSG00000163328
G protein-coupled receptor 155
Low tissue specificity
Detected in all
GPR158
ENSSSCG00000038536
ENSG00000151025
G protein-coupled receptor 158
Tissue enhanced
Detected in some
brain:
32.6
pineal gland:
9.2
pituitary gland:
7.6
retina:
6.6
GPR162
ENSSSCG00000000680
ENSG00000250510
G protein-coupled receptor 162
Tissue enhanced
Detected in some
brain:
25.9
pineal gland:
21.5
GPR3
ENSSSCG00000003576
ENSG00000181773
G-protein coupled receptor 3
Tissue enriched
Detected in some
brain:
10.6
GPR45
ENSSSCG00000025772
ENSG00000135973
G protein-coupled receptor 45
Tissue enhanced
Detected in some
brain:
9.6
ductus deferens:
2.9
GPR61
ENSSSCG00000006825
ENSG00000156097
G protein-coupled receptor 61
Group enriched
Detected in some
brain:
11.1
pineal gland:
3.3
GPR75
ENSSSCG00000008413
ENSG00000119737
Probable G-protein coupled receptor 75
Tissue enriched
Detected in many
brain:
56.9
GPR85
ENSSSCG00000016642
ENSG00000164604
G protein-coupled receptor 85
Tissue enhanced
Detected in some
brain:
24.0
pituitary gland:
8.4
GPRIN1
ENSSSCG00000014054
ENSG00000169258
G protein regulated inducer of neurite outgrowth 1
Group enriched
Detected in many
brain:
36.5
pituitary gland:
9.1
GRAMD1B
ENSSSCG00000015144
ENSG00000023171
GRAM domain containing 1B
Tissue enhanced
Detected in many
adrenal gland:
111.6
kidney:
48.9
ovary:
43.4
GRIA1
ENSSSCG00000022569
ENSG00000155511
Glutamate ionotropic receptor AMPA type subunit 1
Tissue enriched
Detected in some
brain:
64.7
GRIA2
ENSSSCG00000024685
ENSG00000120251
Glutamate ionotropic receptor AMPA type subunit 2
Tissue enriched
Detected in some
brain:
47.1
GRIA3
ENSSSCG00000012638
ENSG00000125675
Glutamate ionotropic receptor AMPA type subunit 3
Tissue enhanced
Detected in many
adrenal gland:
19.6
brain:
27.5
ovary:
13.7
pineal gland:
18.6
GRID1
ENSSSCG00000010352
ENSG00000182771
Glutamate ionotropic receptor delta type subunit 1
Tissue enhanced
Detected in many
brain:
17.9
pineal gland:
9.9
GRID2
ENSSSCG00000009197
ENSG00000152208
Glutamate ionotropic receptor delta type subunit 2
Tissue enhanced
Detected in many
brain:
52.2
thyroid gland:
15.3
GRID2IP
ENSSSCG00000037070
ENSG00000215045
Grid2 interacting protein
Tissue enriched
Detected in some
brain:
17.9
GRIK1
ENSSSCG00000025119
ENSG00000171189
Glutamate ionotropic receptor kainate type subunit 1
Tissue enhanced
Detected in some
choroid plexus:
62.6
pineal gland:
14.6
retina:
21.9
GRIK2
ENSSSCG00000004361
ENSG00000164418
Glutamate ionotropic receptor kainate type subunit 2
Group enriched
Detected in some
brain:
54.3
thyroid gland:
43.1
vagus nerve:
21.4
GRIK4
ENSSSCG00000015131
ENSG00000149403
Glutamate ionotropic receptor kainate type subunit 4
Tissue enhanced
Detected in many
brain:
16.4
male glands:
15.3
GRIN1
ENSSSCG00000039834
ENSG00000176884
Glutamate ionotropic receptor NMDA type subunit 1
Group enriched
Detected in some
brain:
48.8
male glands:
23.9
GRIN2B
ENSSSCG00000000614
ENSG00000273079
Glutamate ionotropic receptor NMDA type subunit 2B
Tissue enriched
Detected in some
brain:
35.0
GRIN2D
ENSSSCG00000003133
ENSG00000105464
Glutamate ionotropic receptor NMDA type subunit 2D
Tissue enhanced
Detected in some
brain:
10.5
GRM1
ENSSSCG00000004119
ENSG00000152822
Glutamate metabotropic receptor 1
Tissue enriched
Detected in some
brain:
33.4
GRM3
ENSSSCG00000015395
ENSG00000198822
Glutamate metabotropic receptor 3
Tissue enriched
Detected in some
brain:
25.4
GRM4
ENSSSCG00000001523
ENSG00000124493
Glutamate metabotropic receptor 4
Tissue enriched
Detected in some
brain:
76.1
GRM5
ENSSSCG00000029865
ENSG00000168959
Glutamate metabotropic receptor 5
Tissue enriched
Detected in some
brain:
27.7
GRM7
ENSSSCG00000023891
ENSG00000196277
Glutamate metabotropic receptor 7
Tissue enhanced
Detected in all
brain:
19.8
pineal gland:
48.5
GRM8
ENSSSCG00000022865
ENSG00000179603
Glutamate metabotropic receptor 8
Group enriched
Detected in some
brain:
15.3
choroid plexus:
5.3
penis:
17.2
retina:
8.6
GSPT2
ENSSSCG00000012317
ENSG00000189369
G1 to S phase transition 2
Low tissue specificity
Detected in all
HAP1
ENSSSCG00000017427
ENSG00000173805
Huntingtin associated protein 1
Tissue enhanced
Detected in some
brain:
30.5
cervix:
8.9
pineal gland:
12.2
pituitary gland:
9.5
HAPLN4
ENSSSCG00000034887
ENSG00000187664
Hyaluronan and proteoglycan link protein 4
Tissue enhanced
Detected in many
brain:
47.5
liver:
14.6
small intestine:
12.0
HCN1
ENSSSCG00000026527
ENSG00000164588
Hyperpolarization activated cyclic nucleotide gated potassium channel 1
Group enriched
Detected in some
brain:
16.1
pineal gland:
23.2
retina:
63.1
HCN3
ENSSSCG00000006518
ENSG00000143630
Hyperpolarization activated cyclic nucleotide gated potassium channel 3
Low tissue specificity
Detected in all
HCN4
ENSSSCG00000001920
ENSG00000138622
Hyperpolarization activated cyclic nucleotide gated potassium channel 4
Tissue enhanced
Detected in many
brain:
20.0
heart:
20.2
HCRTR2
ENSSSCG00000001481
ENSG00000137252
Orexin receptor type 2
Group enriched
Detected in some
brain:
8.5
cornea:
5.0
HDX
ENSSSCG00000038744
ENSG00000165259
Highly divergent homeobox
Tissue enhanced
Detected in some
brain:
13.3
pineal gland:
10.0
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