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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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910 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FAM241B
ENSSSCG00000040498
ENSG00000171224
Family with sequence similarity 241 member B
Tissue enhanced
Detected in some
brain:
7.5
liver:
11.7
FAM57B
ENSSSCG00000037193
ENSG00000149926
Family with sequence similarity 57 member B
Tissue enhanced
Detected in many
pineal gland:
29.6
retina:
85.0
FAT3
ENSSSCG00000014935
ENSG00000165323
FAT atypical cadherin 3
Tissue enhanced
Detected in many
brain:
18.8
dura mater:
10.3
FAXC
ENSSSCG00000004349
ENSG00000146267
Failed axon connections homolog
Tissue enhanced
Detected in all
brain:
33.7
FBLL1
ENSSSCG00000017013
ENSG00000188573
Fibrillarin like 1
Tissue enhanced
Detected in some
brain:
16.7
pineal gland:
7.9
pituitary gland:
4.8
FBXO2
ENSSSCG00000025667
ENSG00000116661
F-box protein 2
Tissue enhanced
Detected in many
brain:
24.6
ductus deferens:
16.4
pineal gland:
11.3
FBXO45
ENSSSCG00000033030
ENSG00000174013
F-box protein 45
Low tissue specificity
Detected in all
FGF12
ENSSSCG00000038584
ENSG00000114279
Fibroblast growth factor 12
Tissue enhanced
Detected in many
brain:
31.0
FGF13
ENSSSCG00000022331
ENSG00000129682
Fibroblast growth factor 13
Tissue enhanced
Detected in many
brain:
47.1
FGF14
ENSSSCG00000009527
ENSG00000102466
Fibroblast growth factor 14
Tissue enhanced
Detected in some
brain:
28.9
pituitary gland:
16.5
thyroid gland:
10.0
FGF8
ENSSSCG00000036146
ENSG00000107831
Fibroblast growth factor 8
Tissue enhanced
Detected in some
adipose tissue:
3.5
brain:
2.1
cartilage:
1.8
retina:
2.1
FLRT1
ENSSSCG00000013044
ENSG00000126500
Fibronectin leucine rich transmembrane protein 1
Tissue enhanced
Detected in many
brain:
12.6
kidney:
18.7
lymphoid tissue:
15.7
thyroid gland:
15.4
FLRT3
ENSSSCG00000007079
ENSG00000125848
Fibronectin leucine rich transmembrane protein 3
Tissue enhanced
Detected in many
skin:
24.8
FNDC10
ENSSSCG00000037622
ENSG00000228594
Fibronectin type III domain containing 10
Tissue enhanced
Detected in many
adrenal gland:
6.3
brain:
12.2
FNDC5
ENSSSCG00000025834
ENSG00000160097
Fibronectin type III domain containing 5
Tissue enhanced
Detected in some
brain:
43.5
choroid plexus:
28.5
retina:
14.5
FRMPD3
ENSSSCG00000012561
ENSG00000147234
FERM and PDZ domain containing 3
Tissue enriched
Detected in some
brain:
15.2
FRRS1L
ENSSSCG00000038824
ENSG00000260230
Ferric chelate reductase 1 like
Tissue enriched
Detected in many
brain:
27.5
FSD1
ENSSSCG00000013505
ENSG00000105255
Fibronectin type III and SPRY domain containing 1
Tissue enhanced
Detected in many
brain:
15.4
FSTL4
ENSSSCG00000014293
ENSG00000053108
Follistatin like 4
Tissue enhanced
Detected in many
adrenal gland:
36.7
brain:
13.5
FSTL5
ENSSSCG00000027183
ENSG00000168843
Follistatin like 5
Group enriched
Detected in some
brain:
46.6
pituitary gland:
12.4
retina:
24.7
FUT9
ENSSSCG00000004338
ENSG00000172461
Fucosyltransferase 9
Tissue enhanced
Detected in some
brain:
32.7
pineal gland:
12.2
retina:
7.2
GABBR2
ENSSSCG00000027558
ENSG00000136928
Gamma-aminobutyric acid type B receptor subunit 2
Tissue enriched
Detected in some
brain:
44.5
GABRA1
ENSSSCG00000023661
ENSG00000022355
Gamma-aminobutyric acid type A receptor alpha1 subunit
Tissue enhanced
Detected in some
brain:
51.1
pineal gland:
20.7
retina:
12.0
GABRA2
ENSSSCG00000028922
ENSG00000151834
Gamma-aminobutyric acid type A receptor alpha2 subunit
Tissue enriched
Detected in some
brain:
50.1
GABRA3
ENSSSCG00000025708
ENSG00000011677
Gamma-aminobutyric acid type A receptor alpha3 subunit
Tissue enriched
Detected in some
brain:
28.9
GABRA4
ENSSSCG00000030515
ENSG00000109158
Gamma-aminobutyric acid type A receptor alpha4 subunit
Tissue enriched
Detected in some
brain:
34.0
GABRB1
ENSSSCG00000035621
ENSG00000163288
Gamma-aminobutyric acid type A receptor beta1 subunit
Tissue enhanced
Detected in some
brain:
25.8
epididymis:
11.7
GABRB2
ENSSSCG00000033558
ENSG00000145864
Gamma-aminobutyric acid type A receptor beta2 subunit
Tissue enriched
Detected in some
brain:
55.1
GABRB3
ENSSSCG00000038547
ENSG00000166206
Gamma-aminobutyric acid type A receptor beta3 subunit
Group enriched
Detected in some
brain:
33.5
pineal gland:
16.5
pituitary gland:
18.3
retina:
11.4
GABRG2
ENSSSCG00000017025
ENSG00000113327
Gamma-aminobutyric acid type A receptor gamma2 subunit
Tissue enhanced
Detected in some
brain:
38.1
pineal gland:
15.9
pituitary gland:
9.1
retina:
10.5
GAD1
ENSSSCG00000022233
ENSG00000128683
Glutamate decarboxylase 1
Tissue enriched
Detected in some
brain:
131.0
GAD2
ENSSSCG00000011060
ENSG00000136750
Glutamate decarboxylase 2
Group enriched
Detected in some
brain:
41.7
retina:
13.6
GALNT13
ENSSSCG00000022671
ENSG00000144278
Polypeptide N-acetylgalactosaminyltransferase 13
Group enriched
Detected in many
brain:
36.2
pineal gland:
17.8
pituitary gland:
23.4
retina:
17.7
synovial tissue:
11.8
GALNT14
ENSSSCG00000008524
ENSG00000158089
Polypeptide N-acetylgalactosaminyltransferase 14
Tissue enhanced
Detected in some
brain:
14.8
lens:
7.5
pituitary gland:
7.3
testis:
14.6
thyroid gland:
10.3
GALNT9
ENSSSCG00000009738
ENSG00000182870
Polypeptide N-acetylgalactosaminyltransferase 9
Group enriched
Detected in some
brain:
25.4
cervix:
16.7
endometrium:
15.4
GALNTL5
ENSSSCG00000016431
ENSG00000106648
Polypeptide N-acetylgalactosaminyltransferase like 5
Tissue enriched
Detected in many
testis:
63.6
GALNTL6
ENSSSCG00000021805
ENSG00000174473
Polypeptide N-acetylgalactosaminyltransferase like 6
Group enriched
Detected in some
brain:
16.2
pituitary gland:
5.2
retina:
6.9
GALR2
ENSSSCG00000017189
ENSG00000182687
Galanin receptor 2
Tissue enhanced
Detected in some
brain:
8.7
ovary:
6.4
GAP43
ENSSSCG00000031244
ENSG00000172020
Neuromodulin
Tissue enriched
Detected in many
brain:
43.8
GARNL3
ENSSSCG00000005609
ENSG00000136895
GTPase activating Rap/RanGAP domain like 3
Tissue enhanced
Detected in many
brain:
20.6
liver:
30.3
salivary gland:
21.8
GBX2
ENSSSCG00000016319
ENSG00000168505
Gastrulation brain homeobox 2
Tissue enriched
Detected in single
brain:
13.5
GDAP1
ENSSSCG00000006173
ENSG00000104381
Ganglioside induced differentiation associated protein 1
Group enriched
Detected in all
brain:
21.9
pineal gland:
11.4
pituitary gland:
10.8
retina:
10.4
GDAP1L1
ENSSSCG00000007373
ENSG00000124194
Ganglioside induced differentiation associated protein 1 like 1
Tissue enhanced
Detected in all
brain:
24.6
GGT7
ENSSSCG00000007285
ENSG00000131067
Gamma-glutamyltransferase 7
Low tissue specificity
Detected in all
GJD2
ENSSSCG00000036219
ENSG00000159248
Gap junction protein delta 2
Tissue enhanced
Detected in some
brain:
6.5
pineal gland:
16.9
retina:
27.6
GLRA2
ENSSSCG00000012129
ENSG00000101958
Glycine receptor alpha 2
Group enriched
Detected in some
brain:
15.4
retina:
5.4
GLRA3
ENSSSCG00000009698
ENSG00000145451
Glycine receptor alpha 3
Group enriched
Detected in some
epididymis:
55.6
male glands:
41.9
GLRB
ENSSSCG00000032722
ENSG00000109738
Glycine receptor subunit beta precursor
Tissue enhanced
Detected in all
brain:
18.7
GLS2
ENSSSCG00000000401
ENSG00000135423
Glutaminase 2
Tissue enriched
Detected in many
liver:
63.9
GLT1D1
ENSSSCG00000033067
ENSG00000151948
Glycosyltransferase 1 domain containing 1
Tissue enhanced
Detected in some
brain:
11.2
pineal gland:
7.1
retina:
9.1
testis:
19.9
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