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UMAP gene cluster
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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910 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CYP46A1
ENSSSCG00000002510
ENSG00000036530
Cytochrome P450 family 46 subfamily A member 1
Tissue enriched
Detected in some
brain:
54.2
DAB1
ENSSSCG00000003833
ENSG00000173406
Disabled homolog 1
Tissue enhanced
Detected in many
brain:
21.4
liver:
21.0
vagus nerve:
14.3
DCC
ENSSSCG00000040836
ENSG00000187323
DCC netrin 1 receptor
Tissue enhanced
Detected in some
brain:
20.5
epididymis:
22.8
male glands:
8.5
DCX
ENSSSCG00000012585
ENSG00000077279
Doublecortin
Group enriched
Detected in many
brain:
47.7
cartilage:
36.4
DENND5B
ENSSSCG00000022636
ENSG00000170456
DENN domain containing 5B
Low tissue specificity
Detected in all
DGKB
ENSSSCG00000015355
ENSG00000136267
Diacylglycerol kinase beta
Tissue enhanced
Detected in many
brain:
68.3
salivary gland:
33.9
DGKG
ENSSSCG00000022550
ENSG00000058866
Diacylglycerol kinase gamma
Tissue enhanced
Detected in many
brain:
47.0
thyroid gland:
27.8
DGKI
ENSSSCG00000016521
ENSG00000157680
Diacylglycerol kinase iota
Tissue enhanced
Detected in many
brain:
29.0
cartilage:
20.5
choroid plexus:
17.7
DIRAS1
ENSSSCG00000038013
ENSG00000176490
DIRAS family GTPase 1
Tissue enhanced
Detected in many
brain:
30.6
pineal gland:
15.5
DIRAS2
ENSSSCG00000031694
ENSG00000165023
GTP-binding protein Di-Ras2
Tissue enhanced
Detected in some
brain:
64.8
gallbladder:
15.6
pineal gland:
33.2
retina:
16.9
DIRAS3
ENSSSCG00000003797
ENSG00000162595
GTP-binding protein Di-Ras3
Group enriched
Detected in some
brain:
96.0
pineal gland:
220.4
pituitary gland:
68.6
DISP2
ENSSSCG00000004776
ENSG00000140323
Dispatched RND transporter family member 2
Tissue enriched
Detected in many
brain:
27.8
DISP3
ENSSSCG00000003417
ENSG00000204624
Dispatched RND transporter family member 3
Tissue enhanced
Detected in some
brain:
13.0
epididymis:
5.6
pineal gland:
13.9
retina:
5.4
DLG2
ENSSSCG00000014904
ENSG00000150672
Discs large MAGUK scaffold protein 2
Group enriched
Detected in many
brain:
45.5
pineal gland:
23.4
retina:
15.3
DLGAP1
ENSSSCG00000003690
ENSG00000170579
DLG associated protein 1
Tissue enhanced
Detected in some
brain:
41.8
ovary:
11.8
pineal gland:
9.4
DMXL2
ENSSSCG00000032517
ENSG00000104093
Dmx like 2
Tissue enhanced
Detected in many
brain:
26.6
pineal gland:
29.3
DNER
ENSSSCG00000016258
ENSG00000187957
Delta/notch like EGF repeat containing
Tissue enhanced
Detected in many
brain:
46.6
pineal gland:
19.8
pituitary gland:
24.7
DOCK3
ENSSSCG00000011416
ENSG00000088538
Dedicator of cytokinesis 3
Tissue enhanced
Detected in many
brain:
27.0
pineal gland:
7.2
DOK5
ENSSSCG00000007488
ENSG00000101134
Docking protein 5
Tissue enhanced
Detected in many
brain:
23.1
retina:
16.1
skeletal muscle:
14.9
DOK6
ENSSSCG00000028977
ENSG00000206052
Docking protein 6
Tissue enhanced
Detected in many
brain:
42.3
retina:
19.0
DPP10
ENSSSCG00000015711
ENSG00000175497
Dipeptidyl peptidase like 10
Tissue enriched
Detected in some
brain:
33.2
DPP6
ENSSSCG00000016423
ENSG00000130226
Dipeptidyl peptidase like 6
Tissue enriched
Detected in some
brain:
44.0
DRD5
ENSSSCG00000008730
ENSG00000169676
Dopamine receptor D5
Group enriched
Detected in some
brain:
13.5
retina:
11.6
DSCAM
ENSSSCG00000012072
ENSG00000171587
DS cell adhesion molecule
Group enriched
Detected in some
brain:
21.0
pituitary gland:
7.2
retina:
7.5
testis:
9.0
DSCAML1
ENSSSCG00000015082
ENSG00000177103
DS cell adhesion molecule like 1
Tissue enhanced
Detected in some
brain:
15.0
fallopian tube:
6.9
retina:
10.8
DZANK1
ENSSSCG00000007094
ENSG00000089091
Double zinc ribbon and ankyrin repeat domains 1
Tissue enhanced
Detected in all
brain:
81.4
DZIP3
ENSSSCG00000011940
ENSG00000198919
DAZ interacting zinc finger protein 3
Tissue enhanced
Detected in all
epididymis:
30.0
ECEL1
ENSSSCG00000016285
ENSG00000171551
Endothelin converting enzyme like 1
Tissue enriched
Detected in some
brain:
32.7
EFNB3
ENSSSCG00000017948
ENSG00000108947
Ephrin-B3 precursor
Tissue enhanced
Detected in some
brain:
23.3
pituitary gland:
7.9
EFR3B
ENSSSCG00000022933
ENSG00000084710
EFR3 homolog B
Tissue enhanced
Detected in many
brain:
38.1
vagus nerve:
13.4
EHD3
ENSSSCG00000035987
ENSG00000013016
EH domain containing 3
Tissue enhanced
Detected in many
adrenal gland:
26.4
lens:
31.8
lymphoid tissue:
22.8
ELAVL2
ENSSSCG00000005130
ENSG00000107105
ELAV like RNA binding protein 2
Group enriched
Detected in some
brain:
36.2
large intestine:
11.5
retina:
9.4
testis:
13.6
ELAVL4
ENSSSCG00000037291
ENSG00000162374
ELAV like RNA binding protein 4
Tissue enriched
Detected in some
brain:
31.8
ELFN2
ENSSSCG00000000131
ENSG00000166897
Extracellular leucine rich repeat and fibronectin type III domain containing 2
Tissue enhanced
Detected in some
brain:
32.5
retina:
8.5
ELMOD1
ENSSSCG00000015002
ENSG00000110675
ELMO domain containing 1
Tissue enhanced
Detected in some
brain:
68.9
pineal gland:
15.6
pituitary gland:
17.7
retina:
20.8
ELOVL4
ENSSSCG00000028080
ENSG00000118402
ELOVL fatty acid elongase 4
Tissue enhanced
Detected in all
pineal gland:
35.1
retina:
59.9
EML5
ENSSSCG00000002427
ENSG00000165521
Echinoderm microtubule associated protein like 5
Tissue enhanced
Detected in many
brain:
42.5
retina:
29.9
EML6
ENSSSCG00000026559
ENSG00000214595
Echinoderm microtubule associated protein like 6
Group enriched
Detected in some
brain:
11.4
pineal gland:
10.1
pituitary gland:
11.5
retina:
14.7
ENO2
ENSSSCG00000028373
ENSG00000111674
Enolase 2
Group enriched
Detected in many
brain:
98.7
pineal gland:
66.7
pituitary gland:
33.0
retina:
46.9
EPHA5
ENSSSCG00000008919
ENSG00000145242
EPH receptor A5
Tissue enhanced
Detected in many
brain:
53.1
thyroid gland:
13.4
ERBB4
ENSSSCG00000016160
ENSG00000178568
Erb-b2 receptor tyrosine kinase 4
Tissue enhanced
Detected in many
brain:
23.5
heart:
35.7
ERC2
ENSSSCG00000024417
ENSG00000187672
ELKS/RAB6-interacting/CAST family member 2
Tissue enhanced
Detected in many
brain:
31.7
pituitary gland:
12.4
ESR2
ENSSSCG00000005109
ENSG00000140009
Estrogen receptor beta
Tissue enhanced
Detected in some
brain:
19.2
pituitary gland:
8.7
ETV5
ENSSSCG00000023229
ENSG00000244405
ETS translocation variant 5
Tissue enhanced
Detected in all
cartilage:
36.1
EXTL1
ENSSSCG00000029558
ENSG00000158008
Exostosin like glycosyltransferase 1
Group enriched
Detected in many
cartilage:
76.1
liver:
72.3
FAM171B
ENSSSCG00000025134
ENSG00000144369
Family with sequence similarity 171 member B
Tissue enhanced
Detected in many
brain:
49.7
pineal gland:
50.1
FAM184A
ENSSSCG00000004245
ENSG00000111879
Family with sequence similarity 184 member A
Tissue enhanced
Detected in many
brain:
25.4
choroid plexus:
25.7
testis:
17.6
FAM19A2
ENSSSCG00000034686
ENSG00000198673
Family with sequence similarity 19 member A2, C-C motif chemokine like
Tissue enriched
Detected in some
brain:
30.5
FAM19A5
ENSSSCG00000034776
ENSG00000219438
Family with sequence similarity 19 member A5, C-C motif chemokine like
Tissue enhanced
Detected in many
brain:
21.9
epididymis:
13.5
vagus nerve:
10.6
FAM234B
ENSSSCG00000000619
ENSG00000084444
Protein FAM234B
Tissue enhanced
Detected in all
brain:
31.8
male glands:
31.5
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