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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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208 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MBD5
ENSSSCG00000015667
ENSG00000204406
Methyl-CpG binding domain protein 5
Low tissue specificity
Detected in all
MBOAT7
ENSSSCG00000003267
ENSG00000125505
Membrane bound O-acyltransferase domain containing 7
Low tissue specificity
Detected in all
MECP2
ENSSSCG00000034742
ENSG00000169057
Methyl-CpG binding protein 2
Low tissue specificity
Detected in all
MED23
ENSSSCG00000004196
ENSG00000112282
Mediator complex subunit 23
Low tissue specificity
Detected in all
MEF2C
ENSSSCG00000014149
ENSG00000081189
Myocyte-specific enhancer factor 2C
Tissue enhanced
Detected in many
brain:
69.6
skeletal muscle:
36.0
MID2
ENSSSCG00000012564
ENSG00000080561
Midline 2
Tissue enhanced
Detected in all
lens:
49.2
MLH1
ENSSSCG00000024222
ENSG00000076242
DNA mismatch repair protein Mlh1
Low tissue specificity
Detected in all
MLH3
ENSSSCG00000002378
ENSG00000119684
MutL homolog 3
Low tissue specificity
Detected in all
MSH2
ENSSSCG00000008428
ENSG00000095002
DNA mismatch repair protein Msh2
Low tissue specificity
Detected in all
MSH6
ENSSSCG00000020931
ENSG00000116062
MutS homolog 6
Low tissue specificity
Detected in all
MTHFR
ENSSSCG00000003428
ENSG00000177000
Methylenetetrahydrofolate reductase
Tissue enriched
Detected in all
epididymis:
94.0
MYT1L
ENSSSCG00000029334
ENSG00000186487
Myelin transcription factor 1 like
Group enriched
Detected in some
brain:
17.3
retina:
4.5
na
ENSSSCG00000002654
ENSG00000103264
Low tissue specificity
Detected in all
na
ENSSSCG00000005934
ENSG00000167632
Tissue enhanced
Detected in all
lens:
90.7
na
ENSSSCG00000007314
ENSG00000088367
Tissue enhanced
Detected in all
lens:
57.2
na
ENSSSCG00000010212
ENSG00000151150
Tissue enhanced
Detected in all
vagus nerve:
64.8
na
ENSSSCG00000012196
ENSG00000169306
Tissue enriched
Detected in some
brain:
17.6
na
ENSSSCG00000012238
ENSG00000156298,ENSG00000250349
Tissue enhanced
Detected in many
brain:
64.9
pineal gland:
25.4
na
ENSSSCG00000012377
ENSG00000090889,ENSG00000226650
Low tissue specificity
Detected in all
na
ENSSSCG00000023139
ENSG00000181038
Tissue enhanced
Detected in all
lens:
36.1
na
ENSSSCG00000027115
ENSG00000122728,ENSG00000147133
Low tissue specificity
Detected in all
na
ENSSSCG00000027526
ENSG00000177239
Low tissue specificity
Detected in all
na
ENSSSCG00000028458
ENSG00000138382
Low tissue specificity
Detected in all
na
ENSSSCG00000031222
ENSG00000155816
Tissue enhanced
Detected in many
brain:
26.3
vagus nerve:
32.8
na
ENSSSCG00000033864
ENSG00000130294
Tissue enhanced
Detected in many
brain:
35.7
lens:
31.3
vagus nerve:
28.5
na
ENSSSCG00000038715
ENSG00000154803
Low tissue specificity
Detected in all
na
ENSSSCG00000039139
ENSG00000142208
RAC-alpha serine/threonine-protein kinase
Low tissue specificity
Detected in all
na
ENSSSCG00000039830
ENSG00000177239
Low tissue specificity
Detected in all
NAA15
ENSSSCG00000009061
ENSG00000164134
N(alpha)-acetyltransferase 15, NatA auxiliary subunit
Low tissue specificity
Detected in all
NDST1
ENSSSCG00000032731
ENSG00000070614
N-deacetylase and N-sulfotransferase 1
Low tissue specificity
Detected in all
NEXMIF
ENSSSCG00000035689
ENSG00000050030
Neurite extension and migration factor
Tissue enhanced
Detected in some
brain:
14.2
pituitary gland:
8.0
NLGN3
ENSSSCG00000027465
ENSG00000196338
Neuroligin 3
Tissue enhanced
Detected in many
brain:
23.8
vagus nerve:
10.8
NONO
ENSSSCG00000023245
ENSG00000147140
Non-POU domain containing octamer binding
Low tissue specificity
Detected in all
NSUN2
ENSSSCG00000017104
ENSG00000037474
NOP2/Sun RNA methyltransferase family member 2
Low tissue specificity
Detected in all
OPHN1
ENSSSCG00000022676
ENSG00000079482
Oligophrenin 1
Low tissue specificity
Detected in all
OPRD1
ENSSSCG00000027401
ENSG00000116329
Opioid receptor delta 1
Tissue enriched
Detected in some
thyroid gland:
34.7
OPRM1
ENSSSCG00000004074
ENSG00000112038
Mu-type opioid receptor
Tissue enriched
Detected in some
brain:
11.7
PACS1
ENSSSCG00000012956
ENSG00000175115
Phosphofurin acidic cluster sorting protein 1
Low tissue specificity
Detected in all
PAK3
ENSSSCG00000025306
ENSG00000077264
P21 (RAC1) activated kinase 3
Tissue enhanced
Detected in many
brain:
35.9
ductus deferens:
43.4
male glands:
39.4
PGAP1
ENSSSCG00000016073
ENSG00000197121
Post-GPI attachment to proteins 1
Low tissue specificity
Detected in all
PHF8
ENSSSCG00000012329
ENSG00000172943
PHD finger protein 8
Low tissue specificity
Detected in all
PIGC
ENSSSCG00000015486
ENSG00000135845
Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
Low tissue specificity
Detected in all
PIGG
ENSSSCG00000039991
ENSG00000174227
Phosphatidylinositol glycan anchor biosynthesis class G
Low tissue specificity
Detected in all
PMS2
ENSSSCG00000007590
ENSG00000122512
PMS1 homolog 2, mismatch repair system component
Low tissue specificity
Detected in all
POU3F3
ENSSSCG00000022096
ENSG00000198914
POU class 3 homeobox 3
Tissue enhanced
Detected in some
epididymis:
29.3
kidney:
28.5
male glands:
66.6
PPP2R1A
ENSSSCG00000024413
ENSG00000105568
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform
Low tissue specificity
Detected in all
PPP2R5D
ENSSSCG00000001654
ENSG00000112640
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform
Low tissue specificity
Detected in all
PRKAR1A
ENSSSCG00000017259
ENSG00000108946
CAMP-dependent protein kinase type I-alpha regulatory subunit
Low tissue specificity
Detected in all
PRSS12
ENSSSCG00000009114
ENSG00000164099
Serine protease 12
Tissue enhanced
Detected in all
choroid plexus:
55.3
PTCHD1
ENSSSCG00000032433
ENSG00000165186
Patched domain containing 1
Tissue enhanced
Detected in many
brain:
17.8
cartilage:
11.7
smooth muscle:
26.4
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