We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies.
More information
.
Don't show this again.
Search
Fields »
AND
NOT
Field
All
Gene name
Human disease related genes
Uniprot keyword
Chromosome
External id
Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
Sort by
Term
Gene name
Class
Cancers
Cardiovascular diseases
Congenital disorders of metabolism
Congenital malformations
Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
Musculoskeletal diseases
Nervous system diseases
Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
Add
Cancel
MENU
HELP
THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
DICTIONARY
THE PROJECT
INTRODUCTION
CONTACT
TECHNICAL DATA
ASSAYS & ANNOTATION
DISCLAIMER
DOWNLOADABLE DATA
HELP & FAQ
LICENCE & CITATION
PRIVACY STATEMENT
RELEASE HISTORY
208 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
Set Default Columns
Apply
1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
Select format to download:
Download TSV
Copy TSV link
Download JSON
Copy JSON link
Show / hide columns
Download:
TSV
|
JSON
|
Custom TSV/JSON
« prev
| Page
of 5 |
next »
Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PUS3
ENSSSCG00000015222
ENSG00000110060
TRNA pseudouridine(38/39) synthase
Low tissue specificity
Detected in all
RAB39B
ENSSSCG00000024233
ENSG00000155961
RAB39B, member RAS oncogene family
Tissue enhanced
Detected in some
brain:
13.0
lymphoid tissue:
10.7
pituitary gland:
7.7
retina:
7.5
RAC1
ENSSSCG00000035090
ENSG00000136238
Ras-related C3 botulinum toxin substrate 1
Low tissue specificity
Detected in all
RBMX
ENSSSCG00000012703
ENSG00000147274
RNA-binding motif protein, X chromosome
Low tissue specificity
Detected in all
RERE
ENSSSCG00000033497
ENSG00000142599
Arginine-glutamic acid dipeptide repeats
Low tissue specificity
Detected in all
RLIM
ENSSSCG00000028538
ENSG00000131263
Ring finger protein, LIM domain interacting
Low tissue specificity
Detected in all
RPS6KA3
ENSSSCG00000012163
ENSG00000177189
Ribosomal protein S6 kinase A3
Tissue enhanced
Detected in all
male glands:
66.0
RSRC1
ENSSSCG00000027556
ENSG00000174891
Arginine and serine rich coiled-coil 1
Low tissue specificity
Detected in all
RTN4R
ENSSSCG00000034656
ENSG00000040608
Reticulon 4 receptor
Group enriched
Detected in some
brain:
15.4
male glands:
8.8
RUSC2
ENSSSCG00000005308
ENSG00000198853
RUN and SH3 domain containing 2
Low tissue specificity
Detected in all
SETBP1
ENSSSCG00000004490
ENSG00000152217
SET binding protein 1
Low tissue specificity
Detected in all
SETD5
ENSSSCG00000011540
ENSG00000168137
SET domain containing 5
Low tissue specificity
Detected in all
SHANK2
ENSSSCG00000033043
ENSG00000162105
SH3 and multiple ankyrin repeat domains 2
Tissue enhanced
Detected in many
male glands:
66.4
salivary gland:
69.2
SLC1A1
ENSSSCG00000005222
ENSG00000106688
Excitatory amino acid transporter 3
Tissue enhanced
Detected in many
brain:
18.7
kidney:
15.9
small intestine:
30.8
SLC29A3
ENSSSCG00000010277
ENSG00000198246
Solute carrier family 29 member 3
Tissue enhanced
Detected in many
thyroid gland:
26.6
SLC6A17
ENSSSCG00000006811
ENSG00000197106
Solute carrier family 6 member 17
Tissue enhanced
Detected in many
brain:
42.8
SLC6A4
ENSSSCG00000017797
ENSG00000108576
Solute carrier family 6 member 4
Low tissue specificity
Detected in all
SLC9A9
ENSSSCG00000011686
ENSG00000181804
Solute carrier family 9 member A9
Low tissue specificity
Detected in all
SLITRK1
ENSSSCG00000009485
ENSG00000178235
SLIT and NTRK-like protein 1 precursor
Group enriched
Detected in some
brain:
24.8
vagus nerve:
35.0
SMARCA4
ENSSSCG00000013629
ENSG00000127616
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Low tissue specificity
Detected in all
SMARCB1
ENSSSCG00000010070
ENSG00000099956
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
Low tissue specificity
Detected in all
SOBP
ENSSSCG00000004379
ENSG00000112320
Sine oculis binding protein homolog
Tissue enhanced
Detected in many
cartilage:
62.5
SOX11
ENSSSCG00000008649
ENSG00000176887
SRY-box 11
Group enriched
Detected in some
brain:
18.5
heart:
10.2
upper respiratory system:
5.6
SOX3
ENSSSCG00000022501
ENSG00000134595
SRY-box 3
Group enriched
Detected in some
brain:
7.4
lens:
14.3
pituitary gland:
5.7
vagus nerve:
5.3
ST3GAL3
ENSSSCG00000034059
ENSG00000126091
CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase
Tissue enhanced
Detected in all
lens:
38.4
STAG1
ENSSSCG00000011652
ENSG00000118007
Stromal antigen 1
Low tissue specificity
Detected in all
SYN2
ENSSSCG00000023225
ENSG00000157152
Synapsin II
Tissue enriched
Detected in many
brain:
57.8
SYNGAP1
ENSSSCG00000001513
ENSG00000197283
Synaptic Ras GTPase activating protein 1
Tissue enhanced
Detected in many
brain:
38.8
SYP
ENSSSCG00000012292
ENSG00000102003
Synaptophysin
Group enriched
Detected in some
brain:
52.9
pineal gland:
78.2
retina:
41.9
TAF13
ENSSSCG00000020842
ENSG00000197780
Transcription initiation factor TFIID subunit 13
Low tissue specificity
Detected in all
TAF2
ENSSSCG00000006000
ENSG00000064313
TATA-box binding protein associated factor 2
Low tissue specificity
Detected in all
TAS2R16
ENSSSCG00000037368
ENSG00000128519
Taste 2 receptor member 16
Tissue enhanced
Detected in some
epididymis:
11.4
fallopian tube:
13.2
upper respiratory system:
6.4
TBL1XR1
ENSSSCG00000011760
ENSG00000177565
Transducin beta like 1 X-linked receptor 1
Low tissue specificity
Detected in all
TBR1
ENSSSCG00000015891
ENSG00000136535
T-box, brain 1
Tissue enriched
Detected in some
brain:
30.3
TECR
ENSSSCG00000031299
ENSG00000099797
Trans-2,3-enoyl-CoA reductase
Low tissue specificity
Detected in all
THOC2
ENSSSCG00000012639
ENSG00000125676
THO complex 2
Low tissue specificity
Detected in all
TMLHE
ENSSSCG00000038442
ENSG00000185973
Trimethyllysine hydroxylase, epsilon
Low tissue specificity
Detected in all
TNIK
ENSSSCG00000028905
ENSG00000154310
TRAF2 and NCK interacting kinase
Low tissue specificity
Detected in all
TP53
ENSSSCG00000017950
ENSG00000141510
Cellular tumor antigen p53
Low tissue specificity
Detected in all
TPH2
ENSSSCG00000021122
ENSG00000139287
Tryptophan hydroxylase 2
Group enriched
Detected in some
brain:
49.5
lens:
19.0
TRIO
ENSSSCG00000016781
ENSG00000038382
Trio Rho guanine nucleotide exchange factor
Low tissue specificity
Detected in all
TRIP12
ENSSSCG00000024373
ENSG00000153827
Thyroid hormone receptor interactor 12
Low tissue specificity
Detected in all
TRMT1
ENSSSCG00000013744
ENSG00000104907
TRNA (guanine(26)-N(2))-dimethyltransferase
Low tissue specificity
Detected in all
TTI2
ENSSSCG00000015833
ENSG00000129696
TELO2 interacting protein 2
Low tissue specificity
Detected in all
TUSC3
ENSSSCG00000021988
ENSG00000104723
Tumor suppressor candidate 3
Tissue enhanced
Detected in many
epididymis:
41.1
pineal gland:
61.3
pituitary gland:
43.7
UBE2A
ENSSSCG00000012621
ENSG00000077721
Ubiquitin conjugating enzyme E2 A
Low tissue specificity
Detected in all
UPF3B
ENSSSCG00000012617
ENSG00000125351
UPF3B, regulator of nonsense mediated mRNA decay
Low tissue specificity
Detected in all
USP27X
ENSSSCG00000012305
ENSG00000273820
Ubiquitin specific peptidase 27, X-linked
Tissue enhanced
Detected in many
adrenal gland:
17.8
brain:
19.9
pituitary gland:
17.4
USP9X
ENSSSCG00000012251
ENSG00000124486
Ubiquitin specific peptidase 9, X-linked
Low tissue specificity
Detected in all
WASHC4
ENSSSCG00000000840
ENSG00000136051
WASH complex subunit 4
Low tissue specificity
Detected in all
« prev
| Page
of 5 |
next »
MENU
