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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
13
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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208 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DRD5
ENSSSCG00000008730
ENSG00000169676
Dopamine receptor D5
Group enriched
Detected in some
brain:
13.5
retina:
11.6
DYNC1H1
ENSSSCG00000040738
ENSG00000197102
Dynein cytoplasmic 1 heavy chain 1
Low tissue specificity
Detected in all
DYRK1A
ENSSSCG00000030480
ENSG00000157540
Dual specificity tyrosine phosphorylation regulated kinase 1A
Low tissue specificity
Detected in all
EDC3
ENSSSCG00000001903
ENSG00000179151
Enhancer of mRNA decapping 3
Low tissue specificity
Detected in all
EDNRB
ENSSSCG00000009477
ENSG00000136160
Endothelin receptor type B
Tissue enhanced
Detected in many
adrenal gland:
64.1
choroid plexus:
64.7
cornea:
49.8
ovary:
62.6
EEF1A2
ENSSSCG00000040401
ENSG00000101210
Eukaryotic translation elongation factor 1 alpha 2
Tissue enhanced
Detected in many
brain:
76.6
heart:
176.3
skeletal muscle:
328.9
EIF3F
ENSSSCG00000039647
ENSG00000175390
Eukaryotic translation initiation factor 3 subunit F
Low tissue specificity
Detected in all
ELP2
ENSSSCG00000020898
ENSG00000134759
Elongator acetyltransferase complex subunit 2
Low tissue specificity
Detected in all
EPCAM
ENSSSCG00000008429
ENSG00000119888
Epithelial cell adhesion molecule
Tissue enhanced
Detected in many
large intestine:
54.3
male glands:
76.4
FH
ENSSSCG00000028178
ENSG00000091483
Fumarate hydratase, mitochondrial
Tissue enhanced
Detected in all
skeletal muscle:
54.3
FKBP5
ENSSSCG00000001549
ENSG00000096060
Peptidyl-prolyl cis-trans isomerase FKBP5
Low tissue specificity
Detected in all
FOXG1
ENSSSCG00000033761
ENSG00000176165
Forkhead box G1
Group enriched
Detected in some
brain:
43.5
testis:
17.4
upper respiratory system:
10.9
FOXP2
ENSSSCG00000016639
ENSG00000128573
Forkhead box protein P2
Tissue enhanced
Detected in many
smooth muscle:
59.6
FRMPD4
ENSSSCG00000030877
ENSG00000169933
FERM and PDZ domain containing 4
Tissue enriched
Detected in many
choroid plexus:
70.0
FTSJ1
ENSSSCG00000025599
ENSG00000068438
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
Low tissue specificity
Detected in all
GABRA2
ENSSSCG00000028922
ENSG00000151834
Gamma-aminobutyric acid type A receptor alpha2 subunit
Tissue enriched
Detected in some
brain:
50.1
GATAD2B
ENSSSCG00000006562
ENSG00000143614
GATA zinc finger domain containing 2B
Low tissue specificity
Detected in all
GDI1
ENSSSCG00000030421
ENSG00000203879
GDP dissociation inhibitor 1
Tissue enhanced
Detected in all
brain:
82.0
GHRL
ENSSSCG00000011568
ENSG00000157017
Appetite-regulating hormone precursor
Tissue enriched
Detected in some
stomach:
70.6
GNB1
ENSSSCG00000021890
ENSG00000078369
G protein subunit beta 1
Tissue enhanced
Detected in all
retina:
163.4
GPT2
ENSSSCG00000002847
ENSG00000166123
Glutamic--pyruvic transaminase 2
Tissue enhanced
Detected in many
brain:
43.4
kidney:
59.2
liver:
39.4
GRIA3
ENSSSCG00000012638
ENSG00000125675
Glutamate ionotropic receptor AMPA type subunit 3
Tissue enhanced
Detected in many
adrenal gland:
19.6
brain:
27.5
ovary:
13.7
pineal gland:
18.6
GRIK2
ENSSSCG00000004361
ENSG00000164418
Glutamate ionotropic receptor kainate type subunit 2
Group enriched
Detected in some
brain:
54.3
thyroid gland:
43.1
vagus nerve:
21.4
GRIN1
ENSSSCG00000039834
ENSG00000176884
Glutamate ionotropic receptor NMDA type subunit 1
Group enriched
Detected in some
brain:
48.8
male glands:
23.9
GRIN2A
ENSSSCG00000031290
ENSG00000183454
Glutamate ionotropic receptor NMDA type subunit 2A
Tissue enriched
Detected in some
brain:
33.0
GRIN2B
ENSSSCG00000000614
ENSG00000273079
Glutamate ionotropic receptor NMDA type subunit 2B
Tissue enriched
Detected in some
brain:
35.0
HCFC1
ENSSSCG00000012793
ENSG00000172534
Host cell factor C1
Low tissue specificity
Detected in all
HDC
ENSSSCG00000004644
ENSG00000140287
Histidine decarboxylase
Low tissue specificity
Detected in all
HERC2
ENSSSCG00000015853
ENSG00000128731
HECT and RLD domain containing E3 ubiquitin protein ligase 2
Low tissue specificity
Detected in all
HIVEP2
ENSSSCG00000004138
ENSG00000010818
Human immunodeficiency virus type I enhancer binding protein 2
Tissue enhanced
Detected in all
cartilage:
67.2
HNMT
ENSSSCG00000035195
ENSG00000150540
Histamine N-methyltransferase
Low tissue specificity
Detected in all
HNRNPH2
ENSSSCG00000033161
ENSG00000126945
Heterogeneous nuclear ribonucleoprotein H2
Low tissue specificity
Detected in all
HTR1D
ENSSSCG00000025500
ENSG00000179546
5-hydroxytryptamine receptor 1D
Tissue enhanced
Detected in many
ovary:
25.9
testis:
20.4
HTR2A
ENSSSCG00000037452
ENSG00000102468
5-hydroxytryptamine receptor 2A
Low tissue specificity
Detected in all
HUWE1
ENSSSCG00000012328
ENSG00000086758
HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase
Low tissue specificity
Detected in all
IMPA1
ENSSSCG00000033791
ENSG00000133731
Inositol monophosphatase 1
Low tissue specificity
Detected in all
IQSEC2
ENSSSCG00000012324
ENSG00000124313
IQ motif and Sec7 domain 2
Tissue enhanced
Detected in many
brain:
31.6
KAT6A
ENSSSCG00000007023
ENSG00000083168
Lysine acetyltransferase 6A
Low tissue specificity
Detected in all
KCNQ5
ENSSSCG00000004281
ENSG00000185760
Potassium voltage-gated channel subfamily Q member 5
Group enriched
Detected in many
brain:
24.8
cartilage:
65.1
KDM5B
ENSSSCG00000010928
ENSG00000117139
Lysine demethylase 5B
Low tissue specificity
Detected in all
KDM5C
ENSSSCG00000012322
ENSG00000126012
Lysine-specific demethylase 5C
Low tissue specificity
Detected in all
KIAA0319
ENSSSCG00000001091
ENSG00000137261
KIAA0319
Tissue enhanced
Detected in some
brain:
19.2
choroid plexus:
9.9
pituitary gland:
11.9
KIRREL3
ENSSSCG00000015234
ENSG00000149571
Kirre like nephrin family adhesion molecule 3
Tissue enhanced
Detected in many
brain:
19.4
retina:
11.7
KLHL15
ENSSSCG00000027652
ENSG00000174010
Kelch like family member 15
Low tissue specificity
Detected in all
KMT5B
ENSSSCG00000031459
ENSG00000110066
Lysine methyltransferase 5B
Low tissue specificity
Detected in all
KPTN
ENSSSCG00000003121
ENSG00000118162
Kaptin, actin binding protein
Low tissue specificity
Detected in all
LINGO1
ENSSSCG00000001872
ENSG00000169783
Leucine rich repeat and Ig domain containing 1
Tissue enhanced
Detected in many
brain:
50.2
LINS1
ENSSSCG00000004820
ENSG00000140471
Lines homolog 1
Tissue enhanced
Detected in all
lens:
41.4
LMAN2L
ENSSSCG00000026939
ENSG00000114988
VIP36-like protein precursor
Low tissue specificity
Detected in all
MAOA
ENSSSCG00000012257
ENSG00000189221
Amine oxidase
Low tissue specificity
Detected in many
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