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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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850 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GLRA1
ENSSSCG00000017078
ENSG00000145888
Glycine receptor alpha 1
Group enriched
Detected in some
brain:
33.7
retina:
9.7
GLRB
ENSSSCG00000032722
ENSG00000109738
Glycine receptor subunit beta precursor
Tissue enhanced
Detected in all
brain:
18.7
GNAL
ENSSSCG00000022163
ENSG00000141404
G protein subunit alpha L
Tissue enriched
Detected in some
brain:
67.5
GNAO1
ENSSSCG00000034192
ENSG00000087258
G protein subunit alpha o1
Tissue enhanced
Detected in many
brain:
62.7
retina:
26.2
GNAT2
ENSSSCG00000006823
ENSG00000134183
G protein subunit alpha transducin 2
Tissue enriched
Detected in all
retina:
68.6
GNB3
ENSSSCG00000000682
ENSG00000111664
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3
Group enriched
Detected in many
pineal gland:
102.6
retina:
90.3
GNB4
ENSSSCG00000037583
ENSG00000114450
G protein subunit beta 4
Low tissue specificity
Detected in many
GPR179
ENSSSCG00000020884
ENSG00000277399
G protein-coupled receptor 179
Group enriched
Detected in many
lens:
7.3
retina:
26.4
GPR88
ENSSSCG00000035602
ENSG00000181656
G protein-coupled receptor 88
Tissue enriched
Detected in some
brain:
89.0
GPSM2
ENSSSCG00000021440
ENSG00000121957
G protein signaling modulator 2
Tissue enhanced
Detected in all
brain:
32.4
GRHL2
ENSSSCG00000006060
ENSG00000083307
Grainyhead like transcription factor 2
Tissue enhanced
Detected in many
male glands:
51.1
GRID2
ENSSSCG00000009197
ENSG00000152208
Glutamate ionotropic receptor delta type subunit 2
Tissue enhanced
Detected in many
brain:
52.2
thyroid gland:
15.3
GRIN2A
ENSSSCG00000031290
ENSG00000183454
Glutamate ionotropic receptor NMDA type subunit 2A
Tissue enriched
Detected in some
brain:
33.0
GRIN2B
ENSSSCG00000000614
ENSG00000273079
Glutamate ionotropic receptor NMDA type subunit 2B
Tissue enriched
Detected in some
brain:
35.0
GRIN2D
ENSSSCG00000003133
ENSG00000105464
Glutamate ionotropic receptor NMDA type subunit 2D
Tissue enhanced
Detected in some
brain:
10.5
GRK1
ENSSSCG00000009562
ENSG00000185974
G protein-coupled receptor kinase 1
Tissue enriched
Detected in some
retina:
73.2
GRM1
ENSSSCG00000004119
ENSG00000152822
Glutamate metabotropic receptor 1
Tissue enriched
Detected in some
brain:
33.4
GRM6
ENSSSCG00000014027
ENSG00000113262
Glutamate metabotropic receptor 6
Group enriched
Detected in some
pineal gland:
16.7
retina:
44.2
GRN
ENSSSCG00000017355
ENSG00000030582
Granulins precursor
Low tissue specificity
Detected in all
GRXCR1
ENSSSCG00000008804
ENSG00000215203
Glutaredoxin and cysteine rich domain containing 1
Tissue enriched
Detected in many
testis:
29.6
GRXCR2
ENSSSCG00000040306
ENSG00000204928
Glutaredoxin and cysteine rich domain containing 2
Low tissue specificity
Detected in all
GSDME
ENSSSCG00000016716
ENSG00000105928
Gasdermin E
Tissue enhanced
Detected in many
choroid plexus:
22.5
GUCA1A
ENSSSCG00000001636
ENSG00000048545
Guanylate cyclase activator 1A
Tissue enriched
Detected in some
retina:
88.0
GUCA1B
ENSSSCG00000001637
ENSG00000112599
Guanylate cyclase activator 1B
Tissue enriched
Detected in some
retina:
65.9
GUCY2D
ENSSSCG00000025345
ENSG00000132518
Guanylate cyclase 2D, retinal
Tissue enriched
Detected in some
retina:
64.3
GUF1
ENSSSCG00000008807
ENSG00000151806
GUF1 homolog, GTPase
Low tissue specificity
Detected in all
HACE1
ENSSSCG00000004364
ENSG00000085382
E3 ubiquitin-protein ligase HACE1
Low tissue specificity
Detected in all
HARS
ENSSSCG00000014375
ENSG00000170445
Histidyl-tRNA synthetase
Low tissue specificity
Detected in all
HCN1
ENSSSCG00000026527
ENSG00000164588
Hyperpolarization activated cyclic nucleotide gated potassium channel 1
Group enriched
Detected in some
brain:
16.1
pineal gland:
23.2
retina:
63.1
HCRT
ENSSSCG00000017410
ENSG00000161610
Orexin Orexin-A Orexin-B
Tissue enriched
Detected in some
brain:
66.0
HEPACAM
ENSSSCG00000015205
ENSG00000165478
Hepatic and glial cell adhesion molecule
Tissue enhanced
Detected in all
pituitary gland:
137.0
HGF
ENSSSCG00000015403
ENSG00000019991
Hepatocyte growth factor
Tissue enhanced
Detected in many
liver:
19.6
HMCN1
ENSSSCG00000035595
ENSG00000143341
Hemicentin 1
Tissue enhanced
Detected in many
lymphoid tissue:
36.7
HNRNPU
ENSSSCG00000010877
ENSG00000153187
Heterogeneous nuclear ribonucleoprotein U
Low tissue specificity
Detected in all
HOMER2
ENSSSCG00000001804
ENSG00000103942
Homer scaffolding protein 2
Tissue enhanced
Detected in many
salivary gland:
47.6
HPCA
ENSSSCG00000032664
ENSG00000121905
Neuron-specific calcium-binding protein hippocalcin
Tissue enriched
Detected in some
brain:
171.1
HSF4
ENSSSCG00000002792
ENSG00000102878
Heat shock transcription factor 4
Tissue enhanced
Detected in many
epididymis:
58.3
thyroid gland:
127.8
HSPB1
ENSSSCG00000039962
ENSG00000106211
Heat shock protein beta-1
Low tissue specificity
Detected in all
HSPB11
ENSSSCG00000026264
ENSG00000081870
Heat shock protein family B (small) member 11
Tissue enriched
Detected in all
lens:
77.9
HSPB3
ENSSSCG00000036059
ENSG00000169271
Heat shock protein family B (small) member 3
Group enriched
Detected in some
heart:
27.8
skeletal muscle:
17.9
HSPB8
ENSSSCG00000009844
ENSG00000152137
Heat shock protein family B (small) member 8
Tissue enhanced
Detected in many
skeletal muscle:
123.2
HTRA2
ENSSSCG00000039882
ENSG00000115317
HtrA serine peptidase 2
Low tissue specificity
Detected in all
HTT
ENSSSCG00000008697
ENSG00000197386
Huntingtin
Low tissue specificity
Detected in all
IBA57
ENSSSCG00000013988
ENSG00000181873
Putative transferase CAF17, mitochondrial
Low tissue specificity
Detected in all
ICK
ENSSSCG00000002628
ENSG00000112144
Intestinal cell kinase
Low tissue specificity
Detected in all
IDH3B
ENSSSCG00000007173
ENSG00000101365
Isocitrate dehydrogenase
Tissue enhanced
Detected in all
skeletal muscle:
66.0
IFT172
ENSSSCG00000026367
ENSG00000138002
Intraflagellar transport 172
Low tissue specificity
Detected in all
IGHMBP2
ENSSSCG00000012878
ENSG00000132740
Immunoglobulin mu binding protein 2
Low tissue specificity
Detected in all
ILDR1
ENSSSCG00000025436
ENSG00000145103
Immunoglobulin like domain containing receptor 1
Tissue enhanced
Detected in many
thyroid gland:
28.5
IMPDH1
ENSSSCG00000016585
ENSG00000106348
Inosine monophosphate dehydrogenase 1
Tissue enhanced
Detected in all
retina:
58.0
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