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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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850 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
IMPG1
ENSSSCG00000004477
ENSG00000112706
Interphotoreceptor matrix proteoglycan 1
Tissue enriched
Detected in single
retina:
109.5
IMPG2
ENSSSCG00000031273
ENSG00000081148
Interphotoreceptor matrix proteoglycan 2
Group enriched
Detected in many
pineal gland:
91.2
retina:
94.7
ITM2B
ENSSSCG00000009403
ENSG00000136156
Integral membrane protein 2B
Tissue enriched
Detected in all
epididymis:
329.8
ITPA
ENSSSCG00000035995
ENSG00000125877
Inosine triphosphatase
Low tissue specificity
Detected in all
ITPR1
ENSSSCG00000023437
ENSG00000150995
Inositol 1,4,5-trisphosphate receptor type 1
Tissue enhanced
Detected in all
cervix:
67.1
JAM3
ENSSSCG00000015256
ENSG00000166086
Junctional adhesion molecule 3
Tissue enhanced
Detected in all
brain:
51.8
lens:
42.1
JPH1
ENSSSCG00000006174
ENSG00000104369
Junctophilin 1
Tissue enhanced
Detected in many
choroid plexus:
37.4
skeletal muscle:
98.5
JPH3
ENSSSCG00000002653
ENSG00000154118
Junctophilin 3
Group enriched
Detected in some
brain:
36.0
mesothelial tissue:
9.7
KANK1
ENSSSCG00000005235
ENSG00000107104
KN motif and ankyrin repeat domains 1
Low tissue specificity
Detected in all
KARS
ENSSSCG00000002704
ENSG00000065427
Lysyl-tRNA synthetase
Low tissue specificity
Detected in all
KCNA1
ENSSSCG00000000716
ENSG00000111262
Potassium voltage-gated channel subfamily A member 1
Group enriched
Detected in some
adrenal gland:
64.8
brain:
42.6
KCNA2
ENSSSCG00000037709
ENSG00000177301
Potassium voltage-gated channel subfamily A member 2
Tissue enhanced
Detected in some
brain:
39.7
choroid plexus:
13.6
retina:
7.8
KCNB1
ENSSSCG00000007462
ENSG00000158445
Potassium voltage-gated channel subfamily B member 1
Tissue enriched
Detected in many
retina:
78.5
KCNC1
ENSSSCG00000013374
ENSG00000129159
Potassium voltage-gated channel subfamily C member 1
Group enriched
Detected in many
brain:
46.6
retina:
12.5
KCNC3
ENSSSCG00000003214
ENSG00000131398
Potassium voltage-gated channel subfamily C member 3
Group enriched
Detected in many
brain:
35.1
retina:
10.2
KCND3
ENSSSCG00000026680
ENSG00000171385
Potassium voltage-gated channel subfamily D member 3
Tissue enhanced
Detected in many
brain:
26.8
KCNJ10
ENSSSCG00000031858
ENSG00000177807
Potassium voltage-gated channel subfamily J member 10
Tissue enriched
Detected in some
brain:
60.8
KCNJ13
ENSSSCG00000025038
ENSG00000115474
Potassium voltage-gated channel subfamily J member 13
Tissue enriched
Detected in many
choroid plexus:
250.6
KCNMA1
ENSSSCG00000010325
ENSG00000156113
Calcium-activated potassium channel subunit alpha-1
Tissue enhanced
Detected in many
cervix:
87.5
pineal gland:
73.5
smooth muscle:
70.9
KCNQ2
ENSSSCG00000031746
ENSG00000075043
Potassium voltage-gated channel subfamily Q member 2
Tissue enriched
Detected in some
brain:
26.5
KCNQ3
ENSSSCG00000005953
ENSG00000184156
Potassium voltage-gated channel subfamily Q member 3
Tissue enriched
Detected in some
brain:
36.7
KCNQ4
ENSSSCG00000003975
ENSG00000117013
Potassium voltage-gated channel subfamily Q member 4
Tissue enhanced
Detected in many
skeletal muscle:
24.0
KCNT1
ENSSSCG00000005762
ENSG00000107147
Potassium sodium-activated channel subfamily T member 1
Tissue enriched
Detected in many
brain:
40.5
KCNT2
ENSSSCG00000010892
ENSG00000162687
Potassium sodium-activated channel subfamily T member 2
Tissue enhanced
Detected in many
brain:
24.0
heart:
12.7
pituitary gland:
17.4
KCNV2
ENSSSCG00000005228
ENSG00000168263
Potassium voltage-gated channel modifier subfamily V member 2
Group enriched
Detected in some
pineal gland:
21.8
retina:
43.9
KCTD17
ENSSSCG00000000135
ENSG00000100379
Potassium channel tetramerization domain containing 17
Tissue enhanced
Detected in many
brain:
47.4
stomach:
34.6
KCTD7
ENSSSCG00000040985
ENSG00000243335
Potassium channel tetramerization domain containing 7
Tissue enhanced
Detected in all
brain:
37.1
epididymis:
44.2
male glands:
49.0
KIF1B
ENSSSCG00000003401
ENSG00000054523
Kinesin family member 1B
Tissue enhanced
Detected in all
brain:
66.5
KIF21A
ENSSSCG00000000779
ENSG00000139116
Kinesin family member 21A
Tissue enhanced
Detected in many
brain:
42.1
lens:
29.2
retina:
31.1
KIF5A
ENSSSCG00000000439
ENSG00000155980
Kinesin family member 5A
Tissue enriched
Detected in many
brain:
86.8
KITLG
ENSSSCG00000035495
ENSG00000049130
Kit ligand precursor
Low tissue specificity
Detected in many
KIZ
ENSSSCG00000007108
ENSG00000088970
Kizuna centrosomal protein
Low tissue specificity
Detected in all
KLC2
ENSSSCG00000012955
ENSG00000174996
Kinesin light chain 2
Tissue enhanced
Detected in all
brain:
41.1
KRT12
ENSSSCG00000017460
ENSG00000187242
Keratin 12
Tissue enriched
Detected in single
cornea:
786.3
KRT3
ENSSSCG00000023254
ENSG00000186442
Keratin 3
Tissue enriched
Detected in some
cornea:
465.8
L1CAM
ENSSSCG00000012787
ENSG00000198910
L1 cell adhesion molecule
Tissue enhanced
Detected in many
ductus deferens:
55.0
kidney:
58.6
vagus nerve:
52.3
LCA5
ENSSSCG00000004469
ENSG00000135338
LCA5, lebercilin
Tissue enhanced
Detected in many
choroid plexus:
63.5
fallopian tube:
23.4
LEMD2
ENSSSCG00000001520
ENSG00000161904
LEM domain containing 2
Low tissue specificity
Detected in all
LGI1
ENSSSCG00000010481
ENSG00000108231
Leucine rich glioma inactivated 1
Low tissue specificity
Detected in all
LHFPL5
ENSSSCG00000001553
ENSG00000197753
LHFPL tetraspan subfamily member 5
Tissue enhanced
Detected in some
brain:
8.5
epididymis:
9.7
pineal gland:
4.3
LIM2
ENSSSCG00000003232
ENSG00000105370
Lens intrinsic membrane protein 2
Tissue enriched
Detected in single
lens:
628.1
LITAF
ENSSSCG00000032381
ENSG00000189067
Lipopolysaccharide induced TNF factor
Tissue enhanced
Detected in all
ovary:
46.1
LMNA
ENSSSCG00000006496
ENSG00000160789
Prelamin-A/C
Low tissue specificity
Detected in many
LMNB2
ENSSSCG00000026784
ENSG00000176619
Lamin B2
Low tissue specificity
Detected in all
LOXHD1
ENSSSCG00000004503
ENSG00000167210
Lipoxygenase homology domains 1
Tissue enhanced
Detected in some
lung:
4.4
stomach:
9.9
LRAT
ENSSSCG00000008995
ENSG00000121207
Lecithin retinol acyltransferase
Low tissue specificity
Detected in all
LRIT3
ENSSSCG00000009135
ENSG00000183423
Leucine rich repeat, Ig-like and transmembrane domains 3
Tissue enriched
Detected in many
retina:
49.8
LRP4
ENSSSCG00000013248
ENSG00000134569
LDL receptor related protein 4
Tissue enhanced
Detected in many
skin:
40.7
small intestine:
32.8
LRP5
ENSSSCG00000012885
ENSG00000162337
LDL receptor related protein 5
Low tissue specificity
Detected in all
LRPAP1
ENSSSCG00000008701
ENSG00000163956
Alpha-2-macroglobulin receptor-associated protein precursor
Low tissue specificity
Detected in all
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