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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
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850 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FAT2
ENSSSCG00000017084
ENSG00000086570
FAT atypical cadherin 2
Tissue enriched
Detected in many
brain:
98.8
FBLN5
ENSSSCG00000002444
ENSG00000140092
Fibulin 5
Tissue enhanced
Detected in many
ovary:
46.7
FBXO38
ENSSSCG00000014427
ENSG00000145868
F-box protein 38
Low tissue specificity
Detected in all
FBXO7
ENSSSCG00000000156
ENSG00000100225
F-box only protein 7
Low tissue specificity
Detected in all
FGD4
ENSSSCG00000000530
ENSG00000139132
FYVE, RhoGEF and PH domain containing 4
Low tissue specificity
Detected in all
FGF12
ENSSSCG00000038584
ENSG00000114279
Fibroblast growth factor 12
Tissue enhanced
Detected in many
brain:
31.0
FGF14
ENSSSCG00000009527
ENSG00000102466
Fibroblast growth factor 14
Tissue enhanced
Detected in some
brain:
28.9
pituitary gland:
16.5
thyroid gland:
10.0
FIG4
ENSSSCG00000004405
ENSG00000112367
Polyphosphoinositide phosphatase
Low tissue specificity
Detected in all
FLVCR1
ENSSSCG00000015590
ENSG00000162769
Feline leukemia virus subgroup C receptor-related protein 1
Low tissue specificity
Detected in all
FOLR1
ENSSSCG00000022236
ENSG00000110195
Folate receptor alpha precursor
Tissue enhanced
Detected in all
choroid plexus:
123.7
synovial tissue:
158.6
FOXE3
ENSSSCG00000003884
ENSG00000186790
Forkhead box E3
Tissue enriched
Detected in some
lens:
18.8
FRMD7
ENSSSCG00000023618
ENSG00000165694
FERM domain containing 7
Tissue enhanced
Detected in some
brain:
29.2
ductus deferens:
19.7
FRRS1L
ENSSSCG00000038824
ENSG00000260230
Ferric chelate reductase 1 like
Tissue enriched
Detected in many
brain:
27.5
FSCN2
ENSSSCG00000026155
ENSG00000186765
Fascin actin-bundling protein 2, retinal
Tissue enhanced
Detected in many
choroid plexus:
22.9
pineal gland:
21.6
retina:
57.2
FTL
ENSSSCG00000003153
ENSG00000087086
Ferritin light chain
Tissue enhanced
Detected in all
lens:
546.5
FUS
ENSSSCG00000030798
ENSG00000089280
RNA-binding protein FUS
Low tissue specificity
Detected in all
FXN
ENSSSCG00000032999
ENSG00000165060
Frataxin
Low tissue specificity
Detected in all
FYCO1
ENSSSCG00000011317
ENSG00000163820
FYVE and coiled-coil domain-containing protein 1
Tissue enhanced
Detected in all
skeletal muscle:
65.0
FZD4
ENSSSCG00000014920
ENSG00000174804
Frizzled class receptor 4
Tissue enhanced
Detected in all
adipose tissue:
65.0
GAB1
ENSSSCG00000009048
ENSG00000109458
GRB2 associated binding protein 1
Tissue enhanced
Detected in all
brain:
93.3
GABBR2
ENSSSCG00000027558
ENSG00000136928
Gamma-aminobutyric acid type B receptor subunit 2
Tissue enriched
Detected in some
brain:
44.5
GABRA1
ENSSSCG00000023661
ENSG00000022355
Gamma-aminobutyric acid type A receptor alpha1 subunit
Tissue enhanced
Detected in some
brain:
51.1
pineal gland:
20.7
retina:
12.0
GABRB1
ENSSSCG00000035621
ENSG00000163288
Gamma-aminobutyric acid type A receptor beta1 subunit
Tissue enhanced
Detected in some
brain:
25.8
epididymis:
11.7
GABRB2
ENSSSCG00000033558
ENSG00000145864
Gamma-aminobutyric acid type A receptor beta2 subunit
Tissue enriched
Detected in some
brain:
55.1
GABRB3
ENSSSCG00000038547
ENSG00000166206
Gamma-aminobutyric acid type A receptor beta3 subunit
Group enriched
Detected in some
brain:
33.5
pineal gland:
16.5
pituitary gland:
18.3
retina:
11.4
GABRD
ENSSSCG00000035018
ENSG00000187730
Gamma-aminobutyric acid type A receptor delta subunit
Tissue enhanced
Detected in some
brain:
30.7
esophagus:
8.3
male glands:
16.6
GABRG2
ENSSSCG00000017025
ENSG00000113327
Gamma-aminobutyric acid type A receptor gamma2 subunit
Tissue enhanced
Detected in some
brain:
38.1
pineal gland:
15.9
pituitary gland:
9.1
retina:
10.5
GAD1
ENSSSCG00000022233
ENSG00000128683
Glutamate decarboxylase 1
Tissue enriched
Detected in some
brain:
131.0
GAL
ENSSSCG00000012883
ENSG00000069482
Galanin peptides preproprotein
Tissue enriched
Detected in some
adrenal gland:
101.7
GAN
ENSSSCG00000002690
ENSG00000261609
Gigaxonin
Low tissue specificity
Detected in all
GARS
ENSSSCG00000016677
ENSG00000106105
Glycyl-tRNA synthetase
Low tissue specificity
Detected in all
GBA
ENSSSCG00000006522
ENSG00000177628
Glucosylceramidase precursor
Low tissue specificity
Detected in all
GBA2
ENSSSCG00000005319
ENSG00000070610
Non-lysosomal glucosylceramidase
Low tissue specificity
Detected in all
GCH1
ENSSSCG00000035715
ENSG00000131979
GTP cyclohydrolase 1
Tissue enhanced
Detected in all
ovary:
25.6
pineal gland:
29.0
GCNT2
ENSSSCG00000033009
ENSG00000111846
Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
Low tissue specificity
Detected in all
GDAP1
ENSSSCG00000006173
ENSG00000104381
Ganglioside induced differentiation associated protein 1
Group enriched
Detected in all
brain:
21.9
pineal gland:
11.4
pituitary gland:
10.8
retina:
10.4
GDF6
ENSSSCG00000034943
ENSG00000156466
Growth differentiation factor 6
Tissue enhanced
Detected in some
aorta:
5.5
cartilage:
22.8
gallbladder:
7.8
GDNF
ENSSSCG00000038727
ENSG00000168621
Glial cell derived neurotrophic factor
Tissue enhanced
Detected in many
liver:
10.8
penis:
9.8
skeletal muscle:
13.1
smooth muscle:
12.4
GFAP
ENSSSCG00000017343
ENSG00000131095
Glial fibrillary acidic protein
Group enriched
Detected in some
brain:
423.1
pineal gland:
126.7
GFPT1
ENSSSCG00000008339
ENSG00000198380
Glutamine--fructose-6-phosphate aminotransferase
Tissue enriched
Detected in all
male glands:
198.6
GIGYF2
ENSSSCG00000016291
ENSG00000204120
GRB10 interacting GYF protein 2
Low tissue specificity
Detected in all
GIPC3
ENSSSCG00000036190
ENSG00000179855
GIPC PDZ domain containing family member 3
Tissue enhanced
Detected in many
lymphoid tissue:
24.7
GJA3
ENSSSCG00000036798
ENSG00000121743
Gap junction protein alpha 3
Tissue enriched
Detected in some
lens:
142.9
GJA8
ENSSSCG00000036239
ENSG00000121634
Gap junction protein alpha 8
Tissue enriched
Detected in single
lens:
215.0
GJB1
ENSSSCG00000012394
ENSG00000169562
Gap junction protein beta 1
Tissue enhanced
Detected in many
epididymis:
101.6
liver:
97.0
male glands:
100.9
GJB2
ENSSSCG00000031936
ENSG00000165474
Gap junction protein beta 2
Group enriched
Detected in many
cornea:
90.1
male glands:
37.5
mouth:
41.1
skin:
52.8
GJB3
ENSSSCG00000038677
ENSG00000188910
Gap junction protein beta 3
Tissue enhanced
Detected in many
cornea:
19.2
male glands:
29.8
upper respiratory system:
19.2
GJB6
ENSSSCG00000036474
ENSG00000121742
Gap junction protein beta 6
Tissue enhanced
Detected in many
brain:
24.3
mouth:
21.2
skin:
39.1
GJC2
ENSSSCG00000013989
ENSG00000198835
Gap junction protein gamma 2
Tissue enriched
Detected in some
brain:
58.1
GLE1
ENSSSCG00000005652
ENSG00000119392
GLE1, RNA export mediator
Low tissue specificity
Detected in all
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