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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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850 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DHTKD1
ENSSSCG00000039539
ENSG00000181192
Dehydrogenase E1 and transketolase domain containing 1
Tissue enhanced
Detected in all
liver:
53.8
DIABLO
ENSSSCG00000009799
ENSG00000184047,ENSG00000284934
Diablo homolog, mitochondrial
Tissue enhanced
Detected in all
testis:
78.6
DIAPH3
ENSSSCG00000009448
ENSG00000139734
Diaphanous related formin 3
Tissue enhanced
Detected in many
lymphoid tissue:
19.2
mouth:
12.1
testis:
21.5
DMXL2
ENSSSCG00000032517
ENSG00000104093
Dmx like 2
Tissue enhanced
Detected in many
brain:
26.6
pineal gland:
29.3
DNA2
ENSSSCG00000010240
ENSG00000138346
DNA replication helicase/nuclease 2
Low tissue specificity
Detected in all
DNAJB2
ENSSSCG00000016217
ENSG00000135924
DnaJ heat shock protein family (Hsp40) member B2
Tissue enhanced
Detected in all
brain:
63.7
lens:
55.2
DNAJC13
ENSSSCG00000011628
ENSG00000138246
DnaJ heat shock protein family (Hsp40) member C13
Low tissue specificity
Detected in all
DNAJC16
ENSSSCG00000003464
ENSG00000116138
DnaJ heat shock protein family (Hsp40) member C16
Low tissue specificity
Detected in all
DNAJC3
ENSSSCG00000026082
ENSG00000102580
DnaJ homolog subfamily C member 3 precursor
Low tissue specificity
Detected in all
DNAL4
ENSSSCG00000000093
ENSG00000100246
Dynein light chain 4, axonemal
Low tissue specificity
Detected in all
DNM1
ENSSSCG00000005641
ENSG00000106976
Dynamin 1
Tissue enhanced
Detected in many
brain:
73.2
cartilage:
41.6
DNM1L
ENSSSCG00000000529
ENSG00000087470
Dynamin 1 like
Low tissue specificity
Detected in all
DNM2
ENSSSCG00000013630
ENSG00000079805
Dynamin 2
Tissue enhanced
Detected in all
male glands:
108.5
DNMT1
ENSSSCG00000013659
ENSG00000130816
DNA (cytosine-5)-methyltransferase 1
Low tissue specificity
Detected in all
DOCK7
ENSSSCG00000003818
ENSG00000116641
Dedicator of cytokinesis 7
Low tissue specificity
Detected in all
DOK7
ENSSSCG00000008702
ENSG00000175920
Docking protein 7
Tissue enhanced
Detected in many
brain:
16.1
heart:
24.7
skeletal muscle:
13.7
DPAGT1
ENSSSCG00000015110
ENSG00000172269
Dolichyl-phosphate N-acetylglucosaminephosphotransferase 1
Low tissue specificity
Detected in all
DRAM2
ENSSSCG00000026922
ENSG00000156171
DNA damage-regulated autophagy modulator protein 2
Low tissue specificity
Detected in all
DST
ENSSSCG00000001499
ENSG00000151914
Dystonin
Low tissue specificity
Detected in all
DSTYK
ENSSSCG00000015286
ENSG00000133059
Dual serine/threonine and tyrosine protein kinase
Low tissue specificity
Detected in all
DYNC1H1
ENSSSCG00000040738
ENSG00000197102
Dynein cytoplasmic 1 heavy chain 1
Low tissue specificity
Detected in all
EEF1A2
ENSSSCG00000040401
ENSG00000101210
Eukaryotic translation elongation factor 1 alpha 2
Tissue enhanced
Detected in many
brain:
76.6
heart:
176.3
skeletal muscle:
328.9
EEF2
ENSSSCG00000025675
ENSG00000167658
Eukaryotic translation elongation factor 2
Low tissue specificity
Detected in all
EFEMP1
ENSSSCG00000008397
ENSG00000115380
EGF-containing fibulin-like extracellular matrix protein 1 precursor
Tissue enhanced
Detected in all
cornea:
98.9
EFHC1
ENSSSCG00000002620
ENSG00000096093
EF-hand domain containing 1
Tissue enhanced
Detected in many
choroid plexus:
26.5
fallopian tube:
34.6
testis:
36.3
upper respiratory system:
37.3
EGR2
ENSSSCG00000010224
ENSG00000122877
E3 SUMO-protein ligase EGR2
Tissue enhanced
Detected in many
epididymis:
35.7
synovial tissue:
43.8
vagus nerve:
64.5
EIF2B2
ENSSSCG00000002377
ENSG00000119718
Eukaryotic translation initiation factor 2B subunit beta
Low tissue specificity
Detected in all
EIF2B3
ENSSSCG00000029808
ENSG00000070785
Eukaryotic translation initiation factor 2B subunit gamma
Low tissue specificity
Detected in all
EIF2B4
ENSSSCG00000023140
ENSG00000115211
Eukaryotic translation initiation factor 2B subunit delta
Low tissue specificity
Detected in all
EIF2B5
ENSSSCG00000011783
ENSG00000145191
Eukaryotic translation initiation factor 2B subunit epsilon
Low tissue specificity
Detected in all
EIF4G1
ENSSSCG00000030255
ENSG00000114867
Eukaryotic translation initiation factor 4 gamma 1
Low tissue specificity
Detected in all
ELMOD3
ENSSSCG00000008238
ENSG00000115459
ELMO domain containing 3
Tissue enhanced
Detected in all
adipose tissue:
80.9
ELOVL4
ENSSSCG00000028080
ENSG00000118402
ELOVL fatty acid elongase 4
Tissue enhanced
Detected in all
pineal gland:
35.1
retina:
59.9
ELOVL5
ENSSSCG00000024149
ENSG00000012660
ELOVL fatty acid elongase 5
Tissue enhanced
Detected in all
adipose tissue:
86.4
EPHA2
ENSSSCG00000003471
ENSG00000142627
EPH receptor A2
Low tissue specificity
Detected in all
EPS8
ENSSSCG00000000600
ENSG00000151491
Epidermal growth factor receptor pathway substrate 8
Tissue enhanced
Detected in all
thyroid gland:
65.7
EPS8L2
ENSSSCG00000012848
ENSG00000177106
EPS8 like 2
Tissue enhanced
Detected in many
stomach:
77.6
ERBB4
ENSSSCG00000016160
ENSG00000178568
Erb-b2 receptor tyrosine kinase 4
Tissue enhanced
Detected in many
brain:
23.5
heart:
35.7
ERCC6
ENSSSCG00000010391
ENSG00000225830
ERCC excision repair 6, chromatin remodeling factor
Low tissue specificity
Detected in all
ERCC8
ENSSSCG00000016934
ENSG00000049167
ERCC excision repair 8, CSA ubiquitin ligase complex subunit
Low tissue specificity
Detected in all
ERLIN2
ENSSSCG00000039480
ENSG00000147475
Erlin-2 precursor
Low tissue specificity
Detected in all
ESPN
ENSSSCG00000003374
ENSG00000187017
Espin
Group enriched
Detected in many
epididymis:
92.1
retina:
24.2
testis:
77.5
ESRP1
ENSSSCG00000006099
ENSG00000104413
Epithelial splicing regulatory protein 1
Tissue enhanced
Detected in many
skin:
44.4
ESRRB
ENSSSCG00000002388
ENSG00000119715
Estrogen related receptor beta
Group enriched
Detected in some
kidney:
15.0
retina:
55.7
EXOSC3
ENSSSCG00000005355
ENSG00000107371
Exosome component 3
Tissue enriched
Detected in all
testis:
28.4
EXOSC8
ENSSSCG00000009358
ENSG00000120699
Exosome component 8
Tissue enhanced
Detected in all
lens:
51.5
EYA4
ENSSSCG00000034139
ENSG00000112319
EYA transcriptional coactivator and phosphatase 4
Tissue enhanced
Detected in many
pituitary gland:
18.8
skeletal muscle:
49.3
upper respiratory system:
19.9
FA2H
ENSSSCG00000002718
ENSG00000103089
Fatty acid 2-hydroxylase
Tissue enhanced
Detected in many
brain:
85.7
vagus nerve:
56.0
FAM161A
ENSSSCG00000008378
ENSG00000170264
Family with sequence similarity 161 member A
Tissue enhanced
Detected in all
testis:
68.3
FARS2
ENSSSCG00000038717
ENSG00000145982
Phenylalanyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
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